Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_F20
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    26   5.8  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    26   7.6  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    26   7.6  

>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +2

Query: 560 YPQYFVNMEVKNKMDYVKMMDGCLDEKICYNYGIIKENEQLRNVRQLFQFPXLT 721
           +P  F++      +DY K M   + + I  ++GI +   + RN+  +  F  ++
Sbjct: 255 FPILFLSPTSTKTIDYAKSMIEWMGDNIVRDFGINENLLEFRNINTITDFSQIS 308


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 551 YEAYPQYFVNMEVKNKMDYVKMMDGCLDEKICYNYGIIKENEQLRN-VRQLF 703
           Y  Y   FVN ++++ +  + + D  + E +     ++   E  RN VRQ++
Sbjct: 263 YNIYQSGFVNKKMESVVKGISLFDSFIPEALPILSDLLPSEENYRNLVRQVY 314


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -1

Query: 339 GKESDLVHHHEIFVGFHVCVAVLAGLDVEVLGDFVVLSFIADLVNVVE-KRQNLLLLFDE 163
           G  S  +HHH++ +  H  +  L G   EV G    L++ +D + +      N++ ++D 
Sbjct: 279 GSRSGAIHHHDVRIANHQ-IGTLQGHSSEVCG----LAWRSDGLQLASGGNDNVVQIWDA 333

Query: 162 RS 157
           RS
Sbjct: 334 RS 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,136
Number of Sequences: 5004
Number of extensions: 60970
Number of successful extensions: 181
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)