Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_F19
         (822 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    44   0.005
UniRef50_A1Z8H7 Cluster: CG13214-PA, isoform A; n=5; Eukaryota|R...    33   8.6  

>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 44.0 bits (99), Expect = 0.005
 Identities = 18/19 (94%), Positives = 19/19 (100%)
 Frame = +2

Query: 377 DPDMIRYIDEFGQTTTKMQ 433
           DPDMIRYIDEFGQTTT+MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_A1Z8H7 Cluster: CG13214-PA, isoform A; n=5; Eukaryota|Rep:
           CG13214-PA, isoform A - Drosophila melanogaster (Fruit
           fly)
          Length = 610

 Score = 33.1 bits (72), Expect = 8.6
 Identities = 23/78 (29%), Positives = 23/78 (29%), Gaps = 1/78 (1%)
 Frame = -3

Query: 820 GGGGGXXXXXPXXGXXXGXXXXGGXXXXGXXXXXXXFXGXPXXXXGGXKXXXXXEXXGXG 641
           G GGG     P      G    GG    G         G P    GG          G G
Sbjct: 356 GRGGGGAPGAPGSPGGGGFGGQGGGGGFGGGGGRGGAPGAPGSPGGGGYGGQGGAGGGYG 415

Query: 640 XXGGEXXGG-PXAXAFPG 590
             GG   GG P A   PG
Sbjct: 416 GGGGRGGGGAPGAPGAPG 433


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 530,502,527
Number of Sequences: 1657284
Number of extensions: 7086139
Number of successful extensions: 12777
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11327
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 70914189703
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)