Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_F18
(922 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 30 0.40
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.40
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.53
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 2.1
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|... 27 2.8
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.7
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 6.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 6.5
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 8.6
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 26 8.6
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 30.3 bits (65), Expect = 0.40
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = -1
Query: 817 GGXGGXXXXXGGXXXGGCXXGGXGRXGXXXGGXXXGGGXXXGAXXGA 677
GG GG G GG G GR G GG G GA GA
Sbjct: 26 GGFGGGRGGARGGGRGGARGGRGGR-GGARGGRGGSSGGRGGAKGGA 71
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.3 bits (65), Expect = 0.40
Identities = 27/93 (29%), Positives = 27/93 (29%), Gaps = 2/93 (2%)
Frame = +3
Query: 543 PGXXGXPPFXGGXPXXPXXHPXPXGGPLGXTPX*KCAXKXNCXXXAPXXAPXXXPPPFXX 722
P G PP P P P G P P A AP AP P
Sbjct: 1115 PAPSGAPPVPKPSVAAPPV-PVPSGAP--PVPKPSVAAPP---VPAPSGAPPVPKPSVAA 1168
Query: 723 PPXXXPXRPXPPFXHPPXXXP--PXXXXXPPXP 815
PP P PP P P P PP P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVP 1201
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/49 (32%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Frame = +3
Query: 681 PXXAPXXXPPPFXXPPXXXPXRPXPPFXHPPXXXPP---XXXXXPPXPP 818
P A P P PP P PP P PP PP PP
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP 1193
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Frame = +3
Query: 678 APXXAPXXXPPPFXXPPXXXPXRPXPPFXHPPXXXP--PXXXXXPPXP 815
AP AP P P PP P PP P P P PP P
Sbjct: 1078 APSGAPPV-PAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVP 1124
Score = 26.6 bits (56), Expect = 4.9
Identities = 27/107 (25%), Positives = 28/107 (26%), Gaps = 5/107 (4%)
Frame = +3
Query: 510 PXXXXXPXXXSPGXXGXP-PFXGGXPXXPXXH--PXPXGGPLGXTPX*KCAXKXNCXXXA 680
P P P P P G P P P P G P K + A
Sbjct: 1115 PAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAP-PVPA 1173
Query: 681 PXXAPXXXPPPFXXPPXXXPXRPXPPFXHPPXXXP--PXXXXXPPXP 815
P P P P P PP P P P PP P
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/53 (30%), Positives = 16/53 (30%)
Frame = +3
Query: 681 PXXAPXXXPPPFXXPPXXXPXRPXPPFXHPPXXXPPXXXXXPPXPPXXXRGAG 839
P AP P PP P PP P PP PP AG
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGA-PPVPKPSVAAPPVPAPSSGIPPVPKPAAG 1187
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +3
Query: 705 PPPFXXPPXXXPXRPXPPFXHPPXXXPP 788
PPP PP P PP P PP
Sbjct: 1211 PPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.53
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +3
Query: 681 PXXAPXXXPPPFXXPPXXXPXRPXPPFXHPPXXXPPXXXXXPPXPP 818
P P P P P P PP PP P PP P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP 1731
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Frame = +3
Query: 690 APXXXPPPFXXPPXX-XPXRPXPPFXHPPXXXPPXXXXXPPXP 815
AP PPP PP P P P PP P P P
Sbjct: 1704 APTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +1
Query: 748 PXPXSXTPPXXGPPXXXXXPPXPP 819
P P S PP PP P PP
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPP 1732
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = +3
Query: 705 PPPFXXPPXXXPXRPXPPFXHPPXXXPPXXXXXPPXPPXXXRGAG 839
PPP PP P P P P PP PP GAG
Sbjct: 732 PPP--PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAG 774
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +3
Query: 693 PXXXPPPFXXPPXXXPXRPXPPFXHPPXXXPPXXXXXPPXPPXXXRGAG 839
P P P PP P PP PP PP PP G
Sbjct: 742 PTPAPAPIPVPPPA-PIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 26.2 bits (55), Expect = 6.5
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = +3
Query: 681 PXXAPXXXPPPFXXPPXXXPXRPXPPFXHPPXXXPPXXXXXPPXPPXXXRG 833
P AP P P P P P PP PP PP PP G
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP----PPPPPPAVSAG 788
Score = 25.8 bits (54), Expect = 8.6
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = +1
Query: 748 PXPXSXTPPXXGPPXXXXXPPXPPXGXGXXGXGXSXPXXXXXXXXXPPPP 897
P P P P PP PP G G G P PPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP--------PPPPP 783
>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 278
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +3
Query: 243 PKDYNPNGNGYEPIDNGAYYVDPPQGRTYFKPT 341
PK PN N +P NG + PP Y KPT
Sbjct: 46 PKASKPNSN--QPYPNGPVCIYPPNIYLYAKPT 76
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 723 PPXXXPXRPXPPFXHPPXXXPPXXXXXPPXP 815
PP P P PP PP PP PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPP-----PPPP 30
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 3.7
Identities = 26/110 (23%), Positives = 29/110 (26%), Gaps = 1/110 (0%)
Frame = +3
Query: 510 PXXXXXPXXXSPGXXGXPPFXGGXPXXPXXHPXPXGGPLGXTPX*KCAXKXNCXXXAPXX 689
P P + G PP P P P G P + + AP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPS---TGRQPPPLSSSRAVSNPPAPPP 393
Query: 690 APXXXPPPFXXPPXXXPXRPXPPFXHPPXXXPPXXXXXPP-XPPXXXRGA 836
A P P PP PP P PP PP GA
Sbjct: 394 AIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGA 443
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 180 KTLTQETATNLLTTARYIVNPPKDYNPNGNGYEPID 287
KT ++ T LL ++V P +NP+ GY ID
Sbjct: 343 KTKSEFLRTWLLKALSHLVAPSFYFNPSTKGYSSID 378
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 6.5
Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Frame = +3
Query: 681 PXXAPXXXPP-PFXXPP----XXXPXRPXPPFXHPPXXXPPXXXXXPPXPP 818
P +P PP P PP P +P P PP P PP PP
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP-SAPSLPSAVPPMPP 199
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.8 bits (54), Expect = 8.6
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = +3
Query: 678 APXXAPXXXPPPFXXPPXXXPXRPXPPFXHPPXXXPPXXXXXPPXPP 818
AP A PPP P P P H P P PP
Sbjct: 735 APTPAVKHHPPPPPVRSSISPSMPPAPLTHANSSTPMNYVSQPESPP 781
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 186 AFSTTLTGVLSVGHSQQSRGRKS 118
A + +TGV S+G S RGRKS
Sbjct: 477 AIAKLITGVGSIGSSATRRGRKS 499
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,722
Number of Sequences: 5004
Number of extensions: 54419
Number of successful extensions: 189
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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