Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_F18
         (922 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.0  
DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    23   3.9  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    23   3.9  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    23   3.9  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    23   3.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 11/33 (33%), Positives = 11/33 (33%)
 Frame = +3

Query: 690 APXXXPPPFXXPPXXXPXRPXPPFXHPPXXXPP 788
           AP   P P   P       P  P   PP   PP
Sbjct: 20  APGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 21.8 bits (44), Expect = 9.0
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +1

Query: 724 PXXXTPGAPXPXSXTPPXXGPP 789
           P     G+P   S  PP  GPP
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPP 52


>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +3

Query: 705 PPPFXXPPXXXPXRPXPPFXHPPXXXPPXXXXXPPXP 815
           P PF       P RP  PF       P      PP P
Sbjct: 114 PVPFPVYYGNFPPRPMGPFVSMQEQIPRFRYIGPPTP 150


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +3

Query: 705 PPPFXXPPXXXPXRPXPPFXHPPXXXPPXXXXXPPXP 815
           P PF       P RP  PF       P      PP P
Sbjct: 114 PVPFPVYYGNFPPRPMGPFVSMQEQIPRFRYIGPPTP 150


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +3

Query: 705 PPPFXXPPXXXPXRPXPPFXHPPXXXPPXXXXXPPXP 815
           P PF       P RP  PF       P      PP P
Sbjct: 114 PVPFPVYYGNFPPRPMGPFVSMQEQIPRFRYIGPPTP 150


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +3

Query: 705 PPPFXXPPXXXPXRPXPPFXHPPXXXPPXXXXXPPXP 815
           P PF       P RP  PF       P      PP P
Sbjct: 114 PVPFPVYYGNFPPRPMGPFVSMQEQIPRFRYIGPPTP 150


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 226  GTSLILPKTTTLMETATNLSTTVHI-TWT 309
            G+  I+P+    +E ATN S T+H+  W+
Sbjct: 1458 GSKPIIPEAARFIEVATN-SITLHLNAWS 1485


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,882
Number of Sequences: 438
Number of extensions: 5782
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)