Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_F16
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.88 
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    29   1.2  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    27   2.7  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   3.6  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -2

Query: 692 GEXGGGXGGFXGGXRGGGXP 633
           G  GGG GGF GG  G G P
Sbjct: 252 GGFGGGPGGFGGGPGGHGGP 271



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -2

Query: 692 GEXGGGXGGFXGGXRG-GGXP 633
           G  GGG GGF GG  G GG P
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGP 244



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -2

Query: 692 GEXGGGXGGFXGGXRG-GGXP 633
           G  GGG GGF GG  G GG P
Sbjct: 238 GGFGGGPGGFGGGLGGFGGGP 258



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -2

Query: 692 GEXGGGXGGFXGGXRG-GGXP 633
           G  GGG GGF GG  G GG P
Sbjct: 245 GGFGGGLGGFGGGPGGFGGGP 265



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -2

Query: 692 GEXGGGXGGFXGGXRGGGXP 633
           G  GGG GGF GG   GG P
Sbjct: 184 GHNGGGFGGFGGG--SGGPP 201


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -2

Query: 692 GEXGGGXGGFXGGXRGG 642
           G  GG  GGF GG RGG
Sbjct: 173 GSRGGSRGGFRGGSRGG 189



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -2

Query: 692 GEXGGGXGGFXGGXRGG 642
           G  GG  GGF GG RGG
Sbjct: 161 GFGGGSRGGFGGGSRGG 177


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
 Frame = -2

Query: 704 PPPXGEXGG---GXGGFXGGXRGG 642
           PPP G  GG   G GGF G   GG
Sbjct: 76  PPPPGAEGGPGAGFGGFPGAGPGG 99


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -2

Query: 692 GEXGGGXGGFXGGXRGG 642
           G  GGG GG  GG RGG
Sbjct: 26  GGFGGGRGGARGGGRGG 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,042,535
Number of Sequences: 5004
Number of extensions: 6147
Number of successful extensions: 29
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)