Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_F16
         (885 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC067737-1|AAH67737.1|  444|Homo sapiens Unknown (protein for IM...    31   7.3  
BC003413-1|AAH03413.1|  217|Homo sapiens nucleolar protein famil...    30   9.7  
AJ276003-1|CAB76563.1|  217|Homo sapiens GAR1 protein protein.         30   9.7  

>BC067737-1|AAH67737.1|  444|Homo sapiens Unknown (protein for
           IMAGE:5298595) protein.
          Length = 444

 Score = 30.7 bits (66), Expect = 7.3
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 719 GXKXXPPPXGEXGGGXGGFXGG 654
           G    PP  G+ GGG GGF GG
Sbjct: 40  GGPGEPPGGGDPGGGSGGFPGG 61


>BC003413-1|AAH03413.1|  217|Homo sapiens nucleolar protein family
           A, member 1 (H/ACA small nucleolar RNPs) protein.
          Length = 217

 Score = 30.3 bits (65), Expect = 9.7
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -2

Query: 704 PPPXGEXGGGXGGFXGGXRGGG 639
           PP  G  GG  GG  GG RGGG
Sbjct: 167 PPRGGGRGGRGGGRGGGGRGGG 188


>AJ276003-1|CAB76563.1|  217|Homo sapiens GAR1 protein protein.
          Length = 217

 Score = 30.3 bits (65), Expect = 9.7
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -2

Query: 704 PPPXGEXGGGXGGFXGGXRGGG 639
           PP  G  GG  GG  GG RGGG
Sbjct: 167 PPRGGGRGGRGGGRGGGGRGGG 188


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,189,011
Number of Sequences: 237096
Number of extensions: 519697
Number of successful extensions: 3775
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3303
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11326166088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)