Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_F16
(885 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 31 0.83
U64609-7|AAB04604.3| 373|Caenorhabditis elegans Sperm-specific ... 27 1.4
U40802-12|AAK19014.2| 265|Caenorhabditis elegans Sperm-specific... 27 1.5
Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical pr... 30 1.9
AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical ... 30 1.9
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 30 2.5
Z78413-7|CAB01657.1| 352|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 29 4.4
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 29 4.4
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 29 5.8
U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical pr... 29 5.8
AF067609-10|AAC17537.1| 163|Caenorhabditis elegans Ground-like ... 28 7.7
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 28 7.7
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 31.5 bits (68), Expect = 0.83
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = -2
Query: 704 PPPXGEXGGGXGGFXGGXRGGG 639
PPP GGG GG GG GGG
Sbjct: 55 PPPPPACGGGCGGGGGGCGGGG 76
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/24 (58%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Frame = -2
Query: 704 PPPX--GEXGGGXGGFXGGXRGGG 639
PPP G GGG GG GG GGG
Sbjct: 114 PPPACGGGCGGGGGGCGGGCGGGG 137
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2
Query: 698 PXGEXGGGXGGFXGGXRGGG 639
P G GGG GG GG GGG
Sbjct: 21 PSGGGGGGGGGCGGGCGGGG 40
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 704 PPPXGEXGGGXGGFXGGXRGG 642
PPP GGG GG GG GG
Sbjct: 112 PPPPPACGGGCGGGGGGCGGG 132
>U64609-7|AAB04604.3| 373|Caenorhabditis elegans Sperm-specific
family, class qprotein 4 protein.
Length = 373
Score = 27.1 bits (57), Expect(2) = 1.4
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 692 GEXGGGXGGFXGGXRGGGXP 633
G GGG GG G GGG P
Sbjct: 326 GPVGGGGGGAKSGGGGGGIP 345
Score = 22.2 bits (45), Expect(2) = 1.4
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2
Query: 704 PPPXGEXGGGXGG 666
PPP G GG GG
Sbjct: 282 PPPSGSAMGGGGG 294
>U40802-12|AAK19014.2| 265|Caenorhabditis elegans Sperm-specific
family, class qprotein 3 protein.
Length = 265
Score = 27.1 bits (57), Expect(2) = 1.5
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 692 GEXGGGXGGFXGGXRGGGXP 633
G GGG GG G GGG P
Sbjct: 220 GPVGGGGGGAKSGGGGGGIP 239
Score = 22.2 bits (45), Expect(2) = 1.5
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2
Query: 704 PPPXGEXGGGXGG 666
PPP G GG GG
Sbjct: 176 PPPSGSAMGGGGG 188
>Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical
protein R07E3.6 protein.
Length = 927
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -2
Query: 692 GEXGGGXGGFXGGXRGGG 639
G GGG GGF GG RG G
Sbjct: 878 GGFGGGGGGFGGGNRGNG 895
>AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical
protein Y66H1A.4 protein.
Length = 244
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = -2
Query: 692 GEXGGGXGGFXGGXRGG 642
G GGG GGF GG RGG
Sbjct: 191 GGFGGGRGGFRGGDRGG 207
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 701 PPXGEXGGGXGGFXGGXRGGG 639
PP GG GG GG RGGG
Sbjct: 148 PPGSNGGGDWGGNGGGGRGGG 168
>Z78413-7|CAB01657.1| 352|Caenorhabditis elegans Hypothetical
protein T01C3.7 protein.
Length = 352
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 692 GEXGGGXGGFXGGXRGG 642
G+ GG GGF GG RGG
Sbjct: 21 GDRGGSRGGFGGGGRGG 37
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
protein R08B4.1b protein.
Length = 1160
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2
Query: 698 PXGEXGGGXGGFXGGXRGGG 639
P G GGG GG GG GGG
Sbjct: 782 PTGSSGGGGGGGNGGSGGGG 801
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 701 PPXGEXGGGXGGFXGGXRGGG 639
PP GGG GG GG GGG
Sbjct: 50 PPPAPCGGGCGGGGGGCGGGG 70
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 701 PPXGEXGGGXGGFXGGXRGGG 639
PP GGG GG GG GGG
Sbjct: 74 PPPAPCGGGCGGGGGGCGGGG 94
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 701 PPXGEXGGGXGGFXGGXRGGG 639
PP GGG GG GG GGG
Sbjct: 50 PPPAPCGGGCGGGGGGCGGGG 70
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 701 PPXGEXGGGXGGFXGGXRGGG 639
PP GGG GG GG GGG
Sbjct: 74 PPPAPCGGGCGGGGGGCGGGG 94
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 692 GEXGGGXGGFXGGXRGGG 639
G GGG GG+ GG GGG
Sbjct: 205 GPGGGGQGGYGGGNYGGG 222
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 692 GEXGGGXGGFXGGXRGGG 639
G GGG GG+ GG GGG
Sbjct: 243 GPGGGGQGGYGGGNYGGG 260
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 692 GEXGGGXGGFXGGXRGGG 639
G GGG GG+ GG GGG
Sbjct: 43 GYGGGGGGGYGGGGYGGG 60
>U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical
protein C27H5.3 protein.
Length = 448
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 719 GXKXXPPPXGEX-GGGXGGFXGGXRGGG 639
G P G+ GGG GGF GG RGGG
Sbjct: 75 GQSGGSDPYGQSRGGGRGGF-GGSRGGG 101
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -2
Query: 683 GGGXGGFXGGXRGGG 639
GGG GGF GG GGG
Sbjct: 328 GGGRGGFDGGRGGGG 342
>AF067609-10|AAC17537.1| 163|Caenorhabditis elegans Ground-like
(grd related) protein20 protein.
Length = 163
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2
Query: 698 PXGEXGGGXGGFXGGXRGGG 639
P G GGG GG GG GGG
Sbjct: 20 PGGGGGGGCGGGCGGGCGGG 39
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 692 GEXGGGXGGFXGGXRGGG 639
G GGG GG+ GG GGG
Sbjct: 174 GYGGGGDGGYGGGGFGGG 191
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 692 GEXGGGXGGFXGGXRGGG 639
G GGG GG+ GG GGG
Sbjct: 187 GFGGGGMGGYGGGMGGGG 204
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,574,415
Number of Sequences: 27780
Number of extensions: 65372
Number of successful extensions: 806
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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