Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_F13
(808 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 85 1e-17
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 71 1e-13
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 48 2e-06
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 45 1e-05
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 41 2e-04
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 38 0.001
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 36 0.007
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 35 0.016
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 33 0.036
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 33 0.048
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 33 0.048
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 32 0.083
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 32 0.083
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 32 0.083
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 31 0.25
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 29 0.59
SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ... 28 1.4
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 28 1.4
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 1.8
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 27 2.4
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 27 2.4
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 27 3.1
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 4.1
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 26 5.5
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 26 5.5
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 26 7.2
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 7.2
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 26 7.2
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 25 9.6
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 25 9.6
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 85.0 bits (201), Expect = 1e-17
Identities = 53/125 (42%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Frame = +3
Query: 387 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP-WHPRDAMLSLK 563
++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP RD + +
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQ 64
Query: 564 P-SQELEKLLLSLYRFYNKSIQAFVNVKL*SWXPTRELAPTNSEGGDSSLVIT*MLNGHA 740
+ + +S+ + + S++ + L PTRELA + +L + HA
Sbjct: 65 SGTGKTATFSISVLQKIDTSLKQCQALIL---APTRELA-QQIQKVVVALGDLMNVECHA 120
Query: 741 CIGGT 755
CIGGT
Sbjct: 121 CIGGT 125
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 71.3 bits (167), Expect = 1e-13
Identities = 40/64 (62%), Positives = 46/64 (71%)
Frame = +2
Query: 539 KGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILXSHKRAGPNKFRRW**LLGDH 718
KGRDVIAQAQSGTGKTATFSI ILQ ID S+R+ QALIL S R + + LGDH
Sbjct: 57 KGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALIL-SPTRELAVQIQNVVLALGDH 115
Query: 719 LNAK 730
+N +
Sbjct: 116 MNVQ 119
Score = 60.5 bits (140), Expect = 3e-10
Identities = 46/127 (36%), Positives = 69/127 (54%), Gaps = 3/127 (2%)
Frame = +3
Query: 387 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP-WHPRDAMLSL 560
M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ RD +
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQA 65
Query: 561 KP-SQELEKLLLSLYRFYNKSIQAFVNVKL*SWXPTRELAPTNSEGGDSSLVIT*MLNGH 737
+ + + + + + + S++ + L PTRELA + +L + H
Sbjct: 66 QSGTGKTATFSIGILQSIDLSVRDTQALIL---SPTRELA-VQIQNVVLALGDHMNVQCH 121
Query: 738 ACIGGTN 758
ACIGGT+
Sbjct: 122 ACIGGTS 128
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 47.6 bits (108), Expect = 2e-06
Identities = 26/67 (38%), Positives = 39/67 (58%)
Frame = +2
Query: 530 LASKGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILXSHKRAGPNKFRRW**LL 709
+A GRD++A+A++GTGKTA F I L+++DT + Q LIL + + L
Sbjct: 77 IALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVC-KTL 135
Query: 710 GDHLNAK 730
G H+N K
Sbjct: 136 GKHMNVK 142
Score = 42.3 bits (95), Expect = 8e-05
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +3
Query: 339 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 506
+N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 507 IQQRAI 524
IQ+ +I
Sbjct: 70 IQEESI 75
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 45.2 bits (102), Expect = 1e-05
Identities = 19/42 (45%), Positives = 33/42 (78%)
Frame = +2
Query: 530 LASKGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALIL 655
L++ R++I Q+QSGTGKTA F++++L ++D S+ + QA+ L
Sbjct: 149 LSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICL 190
Score = 43.6 bits (98), Expect = 3e-05
Identities = 17/33 (51%), Positives = 28/33 (84%)
Frame = +3
Query: 426 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 524
V++F+++ LK ELL+GIY+ F+KPS IQ++A+
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +2
Query: 542 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALIL 655
G DV+ QA+SG GKTA F +S LQQI+ E L+L
Sbjct: 88 GTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVL 125
Score = 32.7 bits (71), Expect = 0.063
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = +3
Query: 435 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 524
F D LK ELLR I GFE PS +QQ I
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCI 82
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 38.3 bits (85), Expect = 0.001
Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 6/48 (12%)
Frame = +2
Query: 530 LASKGRDVIAQAQSGTGKTATFSISILQ------QIDTSIRECQALIL 655
LA +G+D++AQA++G+GKTA + I IL+ QID + R AL+L
Sbjct: 47 LALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLL 94
Score = 32.7 bits (71), Expect = 0.063
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 429 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 524
+TF D NL L R I+ FEKP+++Q I
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETI 45
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 35.9 bits (79), Expect = 0.007
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Frame = +2
Query: 530 LASKGRDVIAQAQSGTGKTATFSISILQQIDTSI--RECQALILXSHK 667
L +GRDV+ A++G+GKTA F I +++ + +++ +ALIL ++
Sbjct: 102 LLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNR 149
Score = 32.3 bits (70), Expect = 0.083
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +3
Query: 435 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI-MPWHPRDAM-LSLKPSQELEKLLLSLYRF 608
F M L + LLR I+ GF+ P+ IQ++ I + RD + ++ S + ++ +
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIE- 129
Query: 609 YNKSIQAFVNVKL*SWXPTRELA 677
+ KS A N + P RELA
Sbjct: 130 HLKSTLANSNTRALILSPNRELA 152
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 34.7 bits (76), Expect = 0.016
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = +2
Query: 545 RDVIAQAQSGTGKTATFSISILQQI 619
RDVI AQ+G+GKTA F++ ++Q++
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQEL 108
Score = 33.1 bits (72), Expect = 0.048
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 2/136 (1%)
Frame = +3
Query: 291 MSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLR 470
M+ S ++ +ED S N + S + D+ ++ +TF ++ + +EL
Sbjct: 1 MAPSEKKLTEDKKNSSLNKKIETSNS-SSEKSSENNNGDSQNNEAPKTFKELGVIDELCE 59
Query: 471 GIYAYGFEKPSAIQQRAI-MPWHPRDAM-LSLKPSQELEKLLLSLYRFYNKSIQAFVNVK 644
GF+ P+ IQQ AI + + RD + L+ S + L + + + F V
Sbjct: 60 ACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVV 119
Query: 645 L*SWXPTRELAPTNSE 692
L PTRELA SE
Sbjct: 120 L---APTRELAYQISE 132
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 33.5 bits (73), Expect = 0.036
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = +3
Query: 426 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP-WHPRDAMLSLK--PSQELEKLLLS 596
+E F D+ L E + + I GFE + IQ+R+I P RD + + K + L L+ +
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPT 147
Query: 597 LYRFYNKSIQAFVNVKL*SWXPTRELA 677
+ Y + + PTRELA
Sbjct: 148 IEMLYALKFKPRNGTGVIIISPTRELA 174
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 33.1 bits (72), Expect = 0.048
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +2
Query: 530 LASKGRDVIAQAQSGTGKTATFSISILQQI 619
LA G+D++ A +G+GKTA F + IL+++
Sbjct: 292 LALLGKDIVGAAVTGSGKTAAFIVPILERL 321
Score = 31.9 bits (69), Expect = 0.11
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 432 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 524
+F MNL +L+G+ GFE P+ IQ + I
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTI 290
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 33.1 bits (72), Expect = 0.048
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +2
Query: 509 PATRNNA-LASKGRDVIAQAQSGTGKTATFSISIL 610
P +N+ + + GRD++A AQ+G+GKTA F IL
Sbjct: 194 PVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPIL 228
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 32.3 bits (70), Expect = 0.083
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 533 ASKGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALIL 655
AS G D+I +A +G+GKT F I IL+ + + QAL++
Sbjct: 156 ASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVV 198
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 32.3 bits (70), Expect = 0.083
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +2
Query: 533 ASKGRDVIAQAQSGTGKTATFSISILQQI 619
A KGRD++ A++G+GKT F + +++ +
Sbjct: 73 ALKGRDILGAAKTGSGKTLAFIVPLIENL 101
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 32.3 bits (70), Expect = 0.083
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 542 GRDVIAQAQSGTGKTATFSISILQQID 622
GRDV+ A++G+GKT F I LQ ++
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLN 228
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 30.7 bits (66), Expect = 0.25
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 539 KGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALIL 655
+GR+ I A++G+GKTA F++ I+++ ALIL
Sbjct: 43 EGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALIL 81
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 29.5 bits (63), Expect = 0.59
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 536 SKGRDVIAQAQSGTGKTATFSISILQQI 619
+ GRDVI A++G+GKT F + + + I
Sbjct: 453 TSGRDVIGVAKTGSGKTIAFLLPMFRHI 480
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 411 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 524
D + V ++ L + + I + G+EKP++IQ +AI
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAI 449
>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 240
Score = 28.3 bits (60), Expect = 1.4
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Frame = +3
Query: 315 SEDWPEDSKNG---PSKDQGSYDGP--PGMDPGTLDTDWDQVVETFDDMNLKEELLRGIY 479
SED E+ +N D+ YD + +D D + + FD+ NL+ L
Sbjct: 131 SEDGEEEEENDYIDEDVDEAGYDIEVVDEAENDDMDNDLEANADAFDESNLEASLSPN-- 188
Query: 480 AYGFEKPSAIQQRAIMPWHPRDAMLSLKPSQELEKLLL 593
A + S I ++P D MLS + QE+EK +L
Sbjct: 189 AELSPRKSHIDHDFVIP---EDEMLSEEEEQEVEKQIL 223
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 426 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRA 521
V TF++ +L+ + GFE P+ IQQ+A
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQA 152
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = +2
Query: 530 LASKGRDVIAQAQSGTGKTATFSISILQQID 622
+A GRD++ + +G+GKT ++ + + I+
Sbjct: 155 MAMSGRDMVGISATGSGKTLSYCLPAIVHIN 185
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 399 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 491
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 545 RDVIAQAQSGTGKTATFSISILQQIDTSI 631
RD++A A +G+GKT + ILQ++ +
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHV 112
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 503 CNPATRNNALASKGRDVIAQAQSGTGKTATFSISILQQI 619
C PA N + +D +AQ+G+GKT + + I+Q++
Sbjct: 169 CLPALLN----TDDKDAFIEAQTGSGKTLAYLLPIVQRL 203
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 402 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 530
LDT+W V + NL+ + + I + F PS I + MP
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMP 226
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 376 DLREWTLGHLTPT 414
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 545 RDVIAQAQSGTGKTATFSISIL 610
+D+I A++G+GKTA F I ++
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLI 308
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 26.2 bits (55), Expect = 5.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 548 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILXSHK 667
++I +S GKT TF S LQ DT+ R + + HK
Sbjct: 120 NLIVVGESSLGKT-TFVNSFLQSNDTNFRPKKTMDFVEHK 158
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Frame = +2
Query: 572 GTGKTATFSISILQQI----DTSIRECQALILXSHKRA 673
G G T F+ SILQQI + SI +C + H R+
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRS 126
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 396 QGPFPEVHRNYLDPSMAHFWNPLANL 319
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/64 (23%), Positives = 30/64 (46%)
Frame = +3
Query: 489 FEKPSAIQQRAIMPWHPRDAMLSLKPSQELEKLLLSLYRFYNKSIQAFVNVKL*SWXPTR 668
F+ A+QQ + HP++ +LS+ + +++ Y + + VN + +W R
Sbjct: 4 FDPLDAVQQIHVQARHPKNRLLSIAHDAKFVDSVIASY----PTFKPVVNERCGTWYVNR 59
Query: 669 ELAP 680
AP
Sbjct: 60 RHAP 63
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = +1
Query: 514 NAQ*CLGIQGTRC---YRSSPVRNWKNCYFLYIDSTTNRYKHS*MSSFDP 654
N + C Q RC Y ++ W N F + + + YK+ +SS P
Sbjct: 15 NLRNCFTFQNQRCLIPYGTTTTIRWYNANFQAVQNNFSDYKNELISSHRP 64
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = +1
Query: 514 NAQ*CLGIQGTRC---YRSSPVRNWKNCYFLYIDSTTNRYKHS*MSSFDP 654
N + C Q RC Y ++ W N F + + + YK+ +SS P
Sbjct: 15 NLRNCFTFQNQRCLIPYGTTTTIRWYNANFQAVQNNFSDYKNELISSHRP 64
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,008
Number of Sequences: 5004
Number of extensions: 58957
Number of successful extensions: 194
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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