Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_F13
(808 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein ( C.ele... 76 3e-14
U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation fact... 76 3e-14
AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical... 70 2e-12
AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical ... 70 2e-12
U13876-12|AAA21169.1| 363|Caenorhabditis elegans Hypothetical p... 51 1e-06
AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved ger... 42 7e-04
EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein. 39 0.004
CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical ... 39 0.004
Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical pr... 38 0.008
Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical pr... 38 0.008
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 38 0.008
Z54327-7|CAD57690.1| 268|Caenorhabditis elegans Hypothetical pr... 38 0.011
Z54327-6|CAA91120.1| 425|Caenorhabditis elegans Hypothetical pr... 38 0.011
U08102-1|AAB65852.1| 417|Caenorhabditis elegans putative RNA he... 38 0.011
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 36 0.034
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 36 0.034
Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical pr... 35 0.060
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 34 0.10
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 34 0.10
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 34 0.10
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 34 0.10
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 33 0.32
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 32 0.42
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 32 0.42
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 32 0.42
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 32 0.56
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 32 0.56
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 32 0.56
Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical pr... 31 0.73
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 31 0.73
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 31 0.73
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 31 0.73
AC006748-6|AAF60516.1| 582|Caenorhabditis elegans Hypothetical ... 31 0.73
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 31 1.3
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 31 1.3
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 31 1.3
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 30 1.7
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 29 3.0
AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical ... 29 3.9
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 29 3.9
U80437-18|AAB37629.1| 518|Caenorhabditis elegans Cell division ... 29 5.2
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 29 5.2
AC006748-5|AAX55685.1| 471|Caenorhabditis elegans Hypothetical ... 29 5.2
AC024830-10|AAF59610.3| 728|Caenorhabditis elegans Hypothetical... 28 6.8
U00033-1|AAC48292.3| 731|Caenorhabditis elegans Hypothetical pr... 28 9.0
>Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein (
C.elegans mRNA for eIF-4A homologue. ).
Length = 402
Score = 75.8 bits (178), Expect = 3e-14
Identities = 33/45 (73%), Positives = 41/45 (91%)
Frame = +3
Query: 396 GTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 530
G ++ ++DQVVE+FDDM LKEELLRGIY +GFEKPSAIQ+RAI+P
Sbjct: 18 GLIEGNYDQVVESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVP 62
Score = 59.7 bits (138), Expect = 2e-09
Identities = 34/68 (50%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Frame = +2
Query: 542 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILXSHKRAGPNKFRRW**LLGDHL 721
G+DVIAQAQSGTGKTATFS+SILQ+ID QAL++ + R + ++ LG++L
Sbjct: 66 GKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQALVM-APTRELAQQIQKVMSALGEYL 124
Query: 722 NAK-WPCL 742
N PC+
Sbjct: 125 NVNILPCI 132
>U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation factor
protein 1, isoforma protein.
Length = 402
Score = 75.8 bits (178), Expect = 3e-14
Identities = 33/45 (73%), Positives = 41/45 (91%)
Frame = +3
Query: 396 GTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 530
G ++ ++DQVVE+FDDM LKEELLRGIY +GFEKPSAIQ+RAI+P
Sbjct: 18 GLIEGNYDQVVESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVP 62
Score = 59.7 bits (138), Expect = 2e-09
Identities = 34/68 (50%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Frame = +2
Query: 542 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILXSHKRAGPNKFRRW**LLGDHL 721
G+DVIAQAQSGTGKTATFS+SILQ+ID QAL++ + R + ++ LG++L
Sbjct: 66 GKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQALVM-APTRELAQQIQKVMSALGEYL 124
Query: 722 NAK-WPCL 742
N PC+
Sbjct: 125 NVNILPCI 132
>AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical
protein F33D11.10 protein.
Length = 399
Score = 69.7 bits (163), Expect = 2e-12
Identities = 38/64 (59%), Positives = 47/64 (73%)
Frame = +2
Query: 539 KGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILXSHKRAGPNKFRRW**LLGDH 718
K RDVIAQAQSGTGKTATFSIS+LQ +DT +RE QALIL S R + ++ LGD+
Sbjct: 62 KARDVIAQAQSGTGKTATFSISVLQSLDTQVRETQALIL-SPTRELAVQIQKVVLALGDY 120
Query: 719 LNAK 730
+N +
Sbjct: 121 MNVQ 124
Score = 65.7 bits (153), Expect = 4e-11
Identities = 46/112 (41%), Positives = 59/112 (52%)
Frame = +3
Query: 423 VVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPWHPRDAMLSLKPSQELEKLLLSLY 602
V+ TFD M L+E+LLRGIYAYGFEKPSAIQQRA+ +++ S + S+
Sbjct: 24 VIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSIS 83
Query: 603 RFYNKSIQAFVNVKL*SWXPTRELAPTNSEGGDSSLVIT*MLNGHACIGGTN 758
+ Q L PTRELA + +L + HACIGGTN
Sbjct: 84 VLQSLDTQVRETQAL-ILSPTRELA-VQIQKVVLALGDYMNVQCHACIGGTN 133
>AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical
protein Y65B4A.6 protein.
Length = 399
Score = 69.7 bits (163), Expect = 2e-12
Identities = 38/64 (59%), Positives = 47/64 (73%)
Frame = +2
Query: 539 KGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILXSHKRAGPNKFRRW**LLGDH 718
K RDVIAQAQSGTGKTATFSIS+LQ +DT +RE QALIL S R + ++ LGD+
Sbjct: 62 KARDVIAQAQSGTGKTATFSISVLQSLDTQVRETQALIL-SPTRELAVQIQKVVLALGDY 120
Query: 719 LNAK 730
+N +
Sbjct: 121 MNVQ 124
Score = 65.7 bits (153), Expect = 4e-11
Identities = 46/112 (41%), Positives = 59/112 (52%)
Frame = +3
Query: 423 VVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPWHPRDAMLSLKPSQELEKLLLSLY 602
++ TFD M L+E+LLRGIYAYGFEKPSAIQQRAI +++ S + S+
Sbjct: 24 IIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSIS 83
Query: 603 RFYNKSIQAFVNVKL*SWXPTRELAPTNSEGGDSSLVIT*MLNGHACIGGTN 758
+ Q L PTRELA + +L + HACIGGTN
Sbjct: 84 VLQSLDTQVRETQAL-ILSPTRELA-VQIQKVVLALGDYMNVQCHACIGGTN 133
>U13876-12|AAA21169.1| 363|Caenorhabditis elegans Hypothetical
protein F57B9.3 protein.
Length = 363
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/29 (75%), Positives = 25/29 (86%)
Frame = +3
Query: 444 MNLKEELLRGIYAYGFEKPSAIQQRAIMP 530
M LKEELLRGIY +GFEKPSAIQ+ A+ P
Sbjct: 1 MELKEELLRGIYGFGFEKPSAIQKSAVAP 29
Score = 38.3 bits (85), Expect = 0.006
Identities = 26/72 (36%), Positives = 36/72 (50%)
Frame = +2
Query: 527 ALASKGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILXSHKRAGPNKFRRW**L 706
A + G+DV Q+Q+G+GKT I ILQ ID Q +IL + +R +
Sbjct: 28 APCTTGKDVTIQSQAGSGKTVISLIDILQGIDCEDAHLQ-VILLAPQRGMAQRAHEQLKS 86
Query: 707 LGDHLNAKWPCL 742
LG +LN CL
Sbjct: 87 LGRNLNVNATCL 98
>AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved
germline helicase protein1 protein.
Length = 430
Score = 41.5 bits (93), Expect = 7e-04
Identities = 14/42 (33%), Positives = 32/42 (76%)
Frame = +2
Query: 530 LASKGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALIL 655
+A G+D++A+A++GTGKT + I ++++I +++ QA+++
Sbjct: 76 VALTGQDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVI 117
Score = 33.9 bits (74), Expect = 0.14
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +3
Query: 435 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 524
F+D L +LL GI+ G+EKPS IQ+ +I
Sbjct: 45 FEDFCLGRDLLMGIFEKGWEKPSPIQEASI 74
>EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein.
Length = 973
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +2
Query: 542 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALIL 655
GRD++ QA+SGTGKT FS+ ++ +D+ Q +I+
Sbjct: 59 GRDMLVQAKSGTGKTLVFSVLAVENLDSRSSHIQKVIV 96
>CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical
protein T06A10.1 protein.
Length = 973
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +2
Query: 542 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALIL 655
GRD++ QA+SGTGKT FS+ ++ +D+ Q +I+
Sbjct: 59 GRDMLVQAKSGTGKTLVFSVLAVENLDSRSSHIQKVIV 96
>Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical
protein T07D4.4c protein.
Length = 613
Score = 37.9 bits (84), Expect = 0.008
Identities = 18/36 (50%), Positives = 27/36 (75%)
Frame = +2
Query: 548 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALIL 655
++IAQAQSGTGKTA F +++L +ID ++ Q + L
Sbjct: 250 NLIAQAQSGTGKTAAFVLTMLCRIDVNLMCPQCICL 285
>Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical
protein T07D4.4b protein.
Length = 638
Score = 37.9 bits (84), Expect = 0.008
Identities = 18/36 (50%), Positives = 27/36 (75%)
Frame = +2
Query: 548 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALIL 655
++IAQAQSGTGKTA F +++L +ID ++ Q + L
Sbjct: 275 NLIAQAQSGTGKTAAFVLTMLCRIDVNLMCPQCICL 310
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
protein T07D4.4a protein.
Length = 1022
Score = 37.9 bits (84), Expect = 0.008
Identities = 18/36 (50%), Positives = 27/36 (75%)
Frame = +2
Query: 548 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALIL 655
++IAQAQSGTGKTA F +++L +ID ++ Q + L
Sbjct: 659 NLIAQAQSGTGKTAAFVLTMLCRIDVNLMCPQCICL 694
>Z54327-7|CAD57690.1| 268|Caenorhabditis elegans Hypothetical
protein C26D10.2b protein.
Length = 268
Score = 37.5 bits (83), Expect = 0.011
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +2
Query: 542 GRDVIAQAQSGTGKTATFSISILQQID 622
G DV+ QA+SG GKTA F I+ LQQ++
Sbjct: 78 GMDVVCQAKSGMGKTAVFVITTLQQLE 104
>Z54327-6|CAA91120.1| 425|Caenorhabditis elegans Hypothetical
protein C26D10.2a protein.
Length = 425
Score = 37.5 bits (83), Expect = 0.011
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +2
Query: 542 GRDVIAQAQSGTGKTATFSISILQQID 622
G DV+ QA+SG GKTA F I+ LQQ++
Sbjct: 78 GMDVVCQAKSGMGKTAVFVITTLQQLE 104
>U08102-1|AAB65852.1| 417|Caenorhabditis elegans putative RNA
helicase protein.
Length = 417
Score = 37.5 bits (83), Expect = 0.011
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +2
Query: 542 GRDVIAQAQSGTGKTATFSISILQQID 622
G DV+ QA+SG GKTA F I+ LQQ++
Sbjct: 77 GMDVVCQAKSGMGKTAVFVITTLQQLE 103
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 35.9 bits (79), Expect = 0.034
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +2
Query: 539 KGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALIL 655
+G D++ A++GTGKT F+I ILQ++ ALIL
Sbjct: 125 EGSDILGCARTGTGKTLAFAIPILQKLSVDPYGIYALIL 163
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 35.9 bits (79), Expect = 0.034
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +2
Query: 539 KGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALIL 655
+G D++ A++GTGKT F+I ILQ++ ALIL
Sbjct: 125 EGSDILGCARTGTGKTLAFAIPILQKLSVDPYGIYALIL 163
>Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical
protein T26G10.1 protein.
Length = 489
Score = 35.1 bits (77), Expect = 0.060
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = +2
Query: 533 ASKGRDVIAQAQSGTGKTATFSISILQQI 619
A +G+DVI A++G+GKT F+I +LQ +
Sbjct: 78 ALQGKDVIGLAETGSGKTGAFAIPVLQSL 106
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 34.3 bits (75), Expect = 0.10
Identities = 13/30 (43%), Positives = 23/30 (76%)
Frame = +2
Query: 530 LASKGRDVIAQAQSGTGKTATFSISILQQI 619
L + G+D++A AQ+G+GKTA F + I+ ++
Sbjct: 331 LVADGKDILACAQTGSGKTAAFLLPIMSRL 360
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 34.3 bits (75), Expect = 0.10
Identities = 13/30 (43%), Positives = 23/30 (76%)
Frame = +2
Query: 530 LASKGRDVIAQAQSGTGKTATFSISILQQI 619
L + G+D++A AQ+G+GKTA F + I+ ++
Sbjct: 331 LVADGKDILACAQTGSGKTAAFLLPIMSRL 360
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 34.3 bits (75), Expect = 0.10
Identities = 13/26 (50%), Positives = 22/26 (84%)
Frame = +2
Query: 542 GRDVIAQAQSGTGKTATFSISILQQI 619
G+DV+A +++G+GKTA F I +LQ++
Sbjct: 61 GKDVVAMSRTGSGKTAAFVIPMLQKL 86
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 34.3 bits (75), Expect = 0.10
Identities = 13/26 (50%), Positives = 22/26 (84%)
Frame = +2
Query: 542 GRDVIAQAQSGTGKTATFSISILQQI 619
G+DV+A +++G+GKTA F I +LQ++
Sbjct: 61 GKDVVAMSRTGSGKTAAFVIPMLQKL 86
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 32.7 bits (71), Expect = 0.32
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = +2
Query: 530 LASKGRDVIAQAQSGTGKTATFSISILQQI 619
+A G+D+ A A +GTGKTA F + IL+++
Sbjct: 181 VALTGKDICACAATGTGKTAAFVLPILERM 210
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 330 EDSKNGPSK-DQGSYDGPPGMDPG-TLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPS 503
E K+G SK Q + D + G +LDT V +F+ MNL ++L+ G+ P+
Sbjct: 116 EKRKSGKSKKSQENEDFFSALIDGKSLDTS---VNVSFEQMNLSRQILKACSGAGYSDPT 172
Query: 504 AIQQRAI 524
IQQ I
Sbjct: 173 PIQQACI 179
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 32.3 bits (70), Expect = 0.42
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +2
Query: 530 LASKGRDVIAQAQSGTGKTATFSISILQQI 619
L +G D++A AQ+G+GKTA F + I+ ++
Sbjct: 585 LIHQGHDIMACAQTGSGKTAAFLLPIMARL 614
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 32.3 bits (70), Expect = 0.42
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +2
Query: 530 LASKGRDVIAQAQSGTGKTATFSISILQQI 619
L +G D++A AQ+G+GKTA F + I+ ++
Sbjct: 585 LIHQGHDIMACAQTGSGKTAAFLLPIMARL 614
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 32.3 bits (70), Expect = 0.42
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +2
Query: 530 LASKGRDVIAQAQSGTGKTATFSISILQQI 619
L +G D++A AQ+G+GKTA F + I+ ++
Sbjct: 585 LIHQGHDIMACAQTGSGKTAAFLLPIMARL 614
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 31.9 bits (69), Expect = 0.56
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +2
Query: 530 LASKGRDVIAQAQSGTGKTATFSISILQQI 619
L +G D++A AQ+G+GKTA F + I+ ++
Sbjct: 374 LVHQGYDIMACAQTGSGKTAAFLLPIMTRL 403
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 31.9 bits (69), Expect = 0.56
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +2
Query: 530 LASKGRDVIAQAQSGTGKTATFSISILQQI 619
L +G D++A AQ+G+GKTA F + I+ ++
Sbjct: 374 LVHQGYDIMACAQTGSGKTAAFLLPIMTRL 403
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 31.9 bits (69), Expect = 0.56
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +2
Query: 530 LASKGRDVIAQAQSGTGKTATFSISILQQI 619
L +G D++A AQ+G+GKTA F + I+ ++
Sbjct: 374 LVHQGYDIMACAQTGSGKTAAFLLPIMTRL 403
>Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical
protein F58G11.2 protein.
Length = 960
Score = 31.5 bits (68), Expect = 0.73
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 542 GRDVIAQAQSGTGKTATFSISILQQI 619
G DV+ QA++ GKTA F + I+ +I
Sbjct: 418 GHDVLGQAETSAGKTAAFGLPIIDKI 443
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 31.5 bits (68), Expect = 0.73
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +2
Query: 545 RDVIAQAQSGTGKTATFSISILQQI 619
RD+++ AQ+G+GKTA F + I+Q I
Sbjct: 177 RDLMSCAQTGSGKTAAFLLPIIQHI 201
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 31.5 bits (68), Expect = 0.73
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +2
Query: 545 RDVIAQAQSGTGKTATFSISILQQI 619
RD+++ AQ+G+GKTA F + I+Q I
Sbjct: 161 RDLMSCAQTGSGKTAAFLLPIIQHI 185
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 31.5 bits (68), Expect = 0.73
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +2
Query: 545 RDVIAQAQSGTGKTATFSISILQQI 619
RD+++ AQ+G+GKTA F + I+Q I
Sbjct: 158 RDLMSCAQTGSGKTAAFLLPIIQHI 182
>AC006748-6|AAF60516.1| 582|Caenorhabditis elegans Hypothetical
protein Y39A3B.5a protein.
Length = 582
Score = 31.5 bits (68), Expect = 0.73
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 390 PFPEVHRNYLDPSMAHFWNPLANLLTFFQTNKT 292
P P + + D FWN L+N LTF Q +KT
Sbjct: 338 PPPAIVASMTDEQKLSFWNKLSNKLTFSQQDKT 370
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 530 LASKGRDVIAQAQSGTGKTATFSISILQQI 619
+A GRD+I+ A++G+GKT F + L I
Sbjct: 162 IAMSGRDIISIAKTGSGKTLAFMLPALVHI 191
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +2
Query: 539 KGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILXSHKRAGP 679
+ RDVI A++G+GKTA F + +L I TS+ + + H+ GP
Sbjct: 337 QNRDVIGVAETGSGKTAAFLLPLLVWI-TSLPKMER---QEHRDLGP 379
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +2
Query: 542 GRDVIAQAQSGTGKTATFSISILQQI 619
GRD+++ AQ+G+GKTA F + ++ I
Sbjct: 203 GRDLMSCAQTGSGKTAAFLVPLVNAI 228
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 393 PGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 524
P + D++ +TF D L E +L+ I G+EK + +Q+ I
Sbjct: 77 PQVDEMDFEPEHKTFADFGLDERILKSIGELGWEKANQVQESVI 120
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/31 (32%), Positives = 24/31 (77%)
Frame = +2
Query: 527 ALASKGRDVIAQAQSGTGKTATFSISILQQI 619
+LA + ++++ +A++G+GKT F I ++Q++
Sbjct: 121 SLALENKNIMGRARTGSGKTGAFLIPLVQKL 151
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 530 LASKGRDVIAQAQSGTGKTATFSISILQQIDTSIRE 637
L G+D I +Q+G+GKT F + L ID + +
Sbjct: 117 LLLSGQDCIGVSQTGSGKTLAFLLPALLHIDAQLAQ 152
>AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical
protein B0511.6 protein.
Length = 544
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +2
Query: 539 KGRDVIAQAQSGTGKTATF---SISILQQIDTSIRECQALILXSHKR 670
+G+DV+A A++G+GKT F +I +L +++ +I+ S R
Sbjct: 104 EGKDVLASAKTGSGKTLAFLLPAIELLHKLNWKQHNGTGVIIVSPTR 150
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 530 LASKGRDVIAQAQSGTGKTATFSISIL 610
+A GRD+I A +G+GKT TF + ++
Sbjct: 223 VALSGRDMIGIASTGSGKTMTFVLPLV 249
>U80437-18|AAB37629.1| 518|Caenorhabditis elegans Cell division
cycle related protein6 protein.
Length = 518
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 551 VIAQAQSGTGKTATFSISILQQIDTSIREC 640
+ Q GTGKTAT ++ +L+ + S+R C
Sbjct: 198 IYVSGQPGTGKTAT-TMRVLKSLGKSVRSC 226
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 542 GRDVIAQAQSGTGKTATFSISILQQI 619
GRDVI A++G+GKT F + + + I
Sbjct: 341 GRDVIGIAKTGSGKTLAFLLPMFRHI 366
>AC006748-5|AAX55685.1| 471|Caenorhabditis elegans Hypothetical
protein Y39A3B.5c protein.
Length = 471
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 360 DPSMAHFWNPLANLLTFFQTNKT 292
D FWN L+N LTF Q +KT
Sbjct: 237 DEQKLSFWNKLSNKLTFSQQDKT 259
>AC024830-10|AAF59610.3| 728|Caenorhabditis elegans Hypothetical
protein Y55F3BR.1 protein.
Length = 728
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 542 GRDVIAQAQSGTGKTATFSISILQ 613
G D + A++G+GKT FS+ I Q
Sbjct: 39 GADALIAAETGSGKTGAFSLPIAQ 62
>U00033-1|AAC48292.3| 731|Caenorhabditis elegans Hypothetical
protein F37C12.7 protein.
Length = 731
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +3
Query: 303 SERRSEDWPEDSKNGPSKD-QG-SYDGPPGMDPGTLDTDWDQVVETFDD 443
SER +W +D ++GP ++ QG + + PG D T+D W + VE +D+
Sbjct: 63 SERVKANWVDD-RDGPIRNIQGHASETFPGKD--TVDKVWRKCVELYDE 108
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,085,313
Number of Sequences: 27780
Number of extensions: 333153
Number of successful extensions: 866
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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