Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_F13
         (808 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       33   0.002
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   4.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   7.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 33.5 bits (73), Expect = 0.002
 Identities = 13/26 (50%), Positives = 21/26 (80%)
 Frame = +2

Query: 542 GRDVIAQAQSGTGKTATFSISILQQI 619
           GRD++A AQ+G+GKTA F++ I+  +
Sbjct: 233 GRDLMACAQTGSGKTAAFAVPIINTL 258



 Score = 27.9 bits (59), Expect = 0.12
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +3

Query: 420 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 524
           Q +E+F+   L+  +L  I   G++KP+ +Q+ A+
Sbjct: 193 QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHAL 227


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 567 SQELEKLLLSLYRFYNKSIQAFVNV 641
           S++ E+L+  L+R YNK I+   N+
Sbjct: 24  SEDEERLVRDLFRGYNKLIRPVQNM 48


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 6/27 (22%)
 Frame = -3

Query: 725 HSSDHQGAIT------TF*ICWGQLSC 663
           H SDH+ AIT       F ICW    C
Sbjct: 264 HVSDHKAAITVGVIMGVFLICWVPFFC 290


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
 Frame = +2

Query: 449 PQRRIVERHIRLWF*KTFC----NPATRNNAL 532
           P +++    I  WF  TFC    N AT  NA+
Sbjct: 521 PDKQLTLNEIYNWFQNTFCYFRRNAATWKNAV 552


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 539 WMPRHYCALLD 507
           WMP H  ALLD
Sbjct: 814 WMPTHLNALLD 824


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,229
Number of Sequences: 438
Number of extensions: 3855
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)