Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_F12
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    29   0.67 
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    29   1.2  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    28   2.0  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    27   4.7  
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    26   8.2  

>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
 Frame = -1

Query: 422 LKGFDN--SPKMPVADSSRPPK**QNLFSXFFE----PXQNFLNSASIFLGSFFTSSDSV 261
           L G DN  SP  P  ++S P     + F  F      P  + LN+AS+F+GS   ++ + 
Sbjct: 279 LLGLDNEPSPAQPQTNTSAPLAFEDDGFGDFQSSAAAPASSTLNNASLFMGS--QTASTA 336

Query: 260 AANFSTVFTHTSQSPSRSDRTTCTA 186
           A N    F     +PS    +   A
Sbjct: 337 AKNDDDAFDDFQSAPSAKPASNTAA 361


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
 Frame = +1

Query: 298 IEAEFKKFCXGSKNXENRFCYYLGGLEESATGILGELS---KPLSWSMPXDXICEKLKKK 468
           IE +  +    S + +NR+ YY   L E  + ILG +    +P    MP   + E  +K 
Sbjct: 84  IEDKLLRISSNSPSAKNRYIYYPDRLNEIPSSILGSIKSIMQPALRPMPLAMMLEPFRKS 143

Query: 469 DAQXCD 486
                D
Sbjct: 144 KRDSTD 149


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +1

Query: 265 LSDDVKKDPKKIEAEFKK 318
           L DD  KDP KIEAE +K
Sbjct: 342 LGDDAIKDPTKIEAEVRK 359


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 562 LNDWDEVCDGC 594
           ++DWD+ CDGC
Sbjct: 339 IDDWDDSCDGC 349


>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 262 TLSDDVKKDPKKIEAEFKKFCXGSKNXENRFCYYLGG 372
           T + ++KK+P K+E   ++ C           YY GG
Sbjct: 285 TSTGELKKEPTKLERASEEICRAISFDVKNDVYYSGG 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,458,749
Number of Sequences: 5004
Number of extensions: 38679
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)