Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_F11
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   223   2e-59
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   223   2e-59
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    42   1e-04
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    27   4.7  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  223 bits (546), Expect = 2e-59
 Identities = 103/141 (73%), Positives = 118/141 (83%)
 Frame = +2

Query: 86  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVXAK 265
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+ K+GV AK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 266 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIXXNDEXLVAGFGRKGHAVGDIPGVRF 445
           QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN +  NDE L++GFGRKG A GDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRF 120

Query: 446 KVVKVANVSLLALYKEKKERP 508
           KVVKVA V L AL+ EKKE+P
Sbjct: 121 KVVKVAGVGLSALFHEKKEKP 141


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  223 bits (546), Expect = 2e-59
 Identities = 103/141 (73%), Positives = 118/141 (83%)
 Frame = +2

Query: 86  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVXAK 265
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+ K+GV AK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 266 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIXXNDEXLVAGFGRKGHAVGDIPGVRF 445
           QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN +  NDE L++GFGRKG A GDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRF 120

Query: 446 KVVKVANVSLLALYKEKKERP 508
           KVVKVA V L AL+ EKKE+P
Sbjct: 121 KVVKVAGVGLSALFHEKKEKP 141


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 28/82 (34%), Positives = 42/82 (51%)
 Frame = +2

Query: 212 GASHAKGIVLXKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIXXNDEXLV 391
           G+   +G+      V  K+PNSA+RK  RV+L   G+ VTA++P  G   H       ++
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIPGIG---HNAQEHAVVL 102

Query: 392 AGFGRKGHAVGDIPGVRFKVVK 457
              GR      D PGV++ VV+
Sbjct: 103 LRGGR----AQDCPGVQYHVVR 120


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -2

Query: 607 HNXXYVXGFYIL*TYKQRASRQQVTYHNVHL*XWSLLFLFVESEERHVGYFYHLKTN--S 434
           HN  Y+   Y   T K++  R  +++HN     W+ L  F+      + YFY   ++  S
Sbjct: 179 HNNPYIIRGYRFYTSKRKCFRSILSWHNETFNIWTHLSAFIVF-FAVLAYFYPSSSSWVS 237

Query: 433 GNVTDGV 413
            NV++ +
Sbjct: 238 SNVSNRI 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,932,054
Number of Sequences: 5004
Number of extensions: 53733
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)