Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_F11
(881 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 253 7e-67
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 253 7e-67
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 253 7e-67
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 110 7e-24
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 50 1e-05
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 50 1e-05
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 50 1e-05
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 50 1e-05
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 50 1e-05
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 50 1e-05
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 253 bits (619), Expect = 7e-67
Identities = 120/143 (83%), Positives = 128/143 (89%)
Frame = +2
Query: 86 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVXAK 265
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVL KVGV AK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 266 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIXXNDEXLVAGFGRKGHAVGDIPGVRF 445
QPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN I NDE LVAGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 446 KVVKVANVSLLALYKEKKERPXS 514
KVVKVANVSLLALYK KKERP S
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 253 bits (619), Expect = 7e-67
Identities = 120/143 (83%), Positives = 128/143 (89%)
Frame = +2
Query: 86 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVXAK 265
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVL KVGV AK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 266 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIXXNDEXLVAGFGRKGHAVGDIPGVRF 445
QPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN I NDE LVAGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 446 KVVKVANVSLLALYKEKKERPXS 514
KVVKVANVSLLALYK KKERP S
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 253 bits (619), Expect = 7e-67
Identities = 120/143 (83%), Positives = 128/143 (89%)
Frame = +2
Query: 86 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVXAK 265
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVL KVGV AK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 266 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIXXNDEXLVAGFGRKGHAVGDIPGVRF 445
QPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN I NDE LVAGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 446 KVVKVANVSLLALYKEKKERPXS 514
KVVKVANVSLLALYK KKERP S
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 110 bits (264), Expect = 7e-24
Identities = 52/58 (89%), Positives = 52/58 (89%)
Frame = +2
Query: 335 FVPRDGCLNHIXXNDEXLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 508
FVP DGCLN I NDE LVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERP
Sbjct: 1 FVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERP 58
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 49.6 bits (113), Expect = 1e-05
Identities = 31/88 (35%), Positives = 44/88 (50%)
Frame = +2
Query: 194 KANPFGGASHAKGIVLXKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIXX 373
K P G KG+VL K+PNSA RKC RV+L G++ F+P +G H
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG---HTLQ 103
Query: 374 NDEXLVAGFGRKGHAVGDIPGVRFKVVK 457
+ ++ GR D+PGV+ VV+
Sbjct: 104 EHQIVLVEGGR----TQDLPGVKLTVVR 127
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 49.6 bits (113), Expect = 1e-05
Identities = 31/88 (35%), Positives = 44/88 (50%)
Frame = +2
Query: 194 KANPFGGASHAKGIVLXKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIXX 373
K P G KG+VL K+PNSA RKC RV+L G++ F+P +G H
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG---HTLQ 103
Query: 374 NDEXLVAGFGRKGHAVGDIPGVRFKVVK 457
+ ++ GR D+PGV+ VV+
Sbjct: 104 EHQIVLVEGGR----TQDLPGVKLTVVR 127
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 49.6 bits (113), Expect = 1e-05
Identities = 31/88 (35%), Positives = 44/88 (50%)
Frame = +2
Query: 194 KANPFGGASHAKGIVLXKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIXX 373
K P G KG+VL K+PNSA RKC RV+L G++ F+P +G H
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG---HTLQ 103
Query: 374 NDEXLVAGFGRKGHAVGDIPGVRFKVVK 457
+ ++ GR D+PGV+ VV+
Sbjct: 104 EHQIVLVEGGR----TQDLPGVKLTVVR 127
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 49.6 bits (113), Expect = 1e-05
Identities = 31/88 (35%), Positives = 44/88 (50%)
Frame = +2
Query: 194 KANPFGGASHAKGIVLXKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIXX 373
K P G KG+VL K+PNSA RKC RV+L G++ F+P +G H
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG---HTLQ 103
Query: 374 NDEXLVAGFGRKGHAVGDIPGVRFKVVK 457
+ ++ GR D+PGV+ VV+
Sbjct: 104 EHQIVLVEGGR----TQDLPGVKLTVVR 127
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 49.6 bits (113), Expect = 1e-05
Identities = 31/88 (35%), Positives = 44/88 (50%)
Frame = +2
Query: 194 KANPFGGASHAKGIVLXKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIXX 373
K P G KG+VL K+PNSA RKC RV+L G++ F+P +G H
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG---HTLQ 103
Query: 374 NDEXLVAGFGRKGHAVGDIPGVRFKVVK 457
+ ++ GR D+PGV+ VV+
Sbjct: 104 EHQIVLVEGGR----TQDLPGVKLTVVR 127
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 49.6 bits (113), Expect = 1e-05
Identities = 31/88 (35%), Positives = 44/88 (50%)
Frame = +2
Query: 194 KANPFGGASHAKGIVLXKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIXX 373
K P G KG+VL K+PNSA RKC RV+L G++ F+P +G H
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG---HTLQ 103
Query: 374 NDEXLVAGFGRKGHAVGDIPGVRFKVVK 457
+ ++ GR D+PGV+ VV+
Sbjct: 104 EHQIVLVEGGR----TQDLPGVKLTVVR 127
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,963,482
Number of Sequences: 237096
Number of extensions: 2209282
Number of successful extensions: 6017
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6017
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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