Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_F11
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   249   2e-66
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    44   1e-04
U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical pr...    29   5.8  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  249 bits (609), Expect = 2e-66
 Identities = 112/143 (78%), Positives = 126/143 (88%)
 Frame = +2

Query: 86  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVXAK 265
           MGKP+G+ TARK   HR+EQRW DK +KKAH+GT+WK+NPFGGASHAKGIVL K+GV AK
Sbjct: 1   MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAK 60

Query: 266 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIXXNDEXLVAGFGRKGHAVGDIPGVRF 445
           QPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN +  NDE LV+GFGR GHAVGDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRF 120

Query: 446 KVVKVANVSLLALYKEKKERPXS 514
           K+VKVAN SL+AL+K KKERP S
Sbjct: 121 KIVKVANTSLIALFKGKKERPRS 143


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 28/66 (42%), Positives = 39/66 (59%)
 Frame = +2

Query: 212 GASHAKGIVLXKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIXXNDEXLV 391
           G SH KGIVL  V    K+PNS  RKC  V+L   G +V A++P  G  +++  + + LV
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQVLV 128

Query: 392 AGFGRK 409
            G GR+
Sbjct: 129 KG-GRR 133


>U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical
           protein D2024.4 protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 157 VRPSLFTTVVHVLTRRSYSSG 95
           VRP + TTV+HV+ R    SG
Sbjct: 189 VRPGIMTTVIHVMDRNPMKSG 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,789,260
Number of Sequences: 27780
Number of extensions: 328093
Number of successful extensions: 621
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)