Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_F10
(890 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0156 - 1086750-1086920,1087680-1087847,1087935-1088171,108... 80 3e-15
05_01_0365 + 2865496-2865588,2865673-2865856,2866791-2866948,286... 75 8e-14
09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960... 74 2e-13
09_03_0089 + 12265916-12267232 29 3.8
04_01_0039 + 455760-457631 29 5.0
09_02_0622 - 11310941-11311472,11312776-11312813,11312875-113129... 29 6.6
>02_01_0156 -
1086750-1086920,1087680-1087847,1087935-1088171,
1088763-1089073,1089343-1089571
Length = 371
Score = 79.8 bits (188), Expect = 3e-15
Identities = 46/140 (32%), Positives = 71/140 (50%)
Frame = +2
Query: 92 AQIISGIEVAGSIXNDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYXXXXXXXXXXX 271
A+II G VA I ++ ++ +++ G P LA++ VG R+DS Y
Sbjct: 80 AKIIDGKLVAKQIREEIAVEIAKMKDA-IGVVPGLAVILVGSRKDSQTYVRNKKKACEAV 138
Query: 272 XXXXXHIRLPRDITEIELLXKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKX 451
+ LP D +E E+L I + N PSVHGI+VQ+PL H ++ + +AVS +K
Sbjct: 139 GIKSYEVNLPEDSSEDEVLKHIATFNSDPSVHGILVQLPL--PHHMNDENILNAVSIEKD 196
Query: 452 VDXLNTINEGXXAVXDLSXF 511
VD + +N G A+ F
Sbjct: 197 VDGFHPLNIGRLAMQGRDPF 216
Score = 36.3 bits (80), Expect = 0.033
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +1
Query: 523 TPAGCVELIKXTXXTIPXKNVVVLRRSPIVGTPVSELLK 639
TP GC+EL+ I K VV+ RS IVG P + LL+
Sbjct: 221 TPKGCMELLHRYGVEIKGKRAVVIGRSNIVGMPAALLLQ 259
>05_01_0365 +
2865496-2865588,2865673-2865856,2866791-2866948,
2867035-2867247,2867330-2867560
Length = 292
Score = 74.9 bits (176), Expect = 8e-14
Identities = 46/135 (34%), Positives = 68/135 (50%)
Frame = +2
Query: 89 MAQIISGIEVAGSIXNDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYXXXXXXXXXX 268
MAQII G VA I ++ V L S + P LA+V VG R+DS Y
Sbjct: 1 MAQIIDGKAVAADIRREVAADVAALSSAHN-LVPGLAVVIVGSRKDSQTYVQMKRKACAE 59
Query: 269 XXXXXXHIRLPRDITEIELLXKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDK 448
+ L DI+E L+ ++ LN P+VHGI+VQ+PL I+ ++ + +S +K
Sbjct: 60 VGIRSVDVDLAEDISEAALVAEVHRLNADPAVHGILVQLPLPKH--INEEKILNEISLEK 117
Query: 449 XVDXLNTINEGXXAV 493
VD + +N G A+
Sbjct: 118 DVDGFHPLNIGKLAM 132
Score = 41.5 bits (93), Expect = 9e-04
Identities = 21/38 (55%), Positives = 25/38 (65%)
Frame = +1
Query: 523 TPAGCVELIKXTXXTIPXKNVVVLRRSPIVGTPVSELL 636
TP GC+EL+ + TI K VV+ RS IVG PVS LL
Sbjct: 143 TPKGCMELLTRSGVTINGKRAVVVGRSNIVGLPVSLLL 180
>09_02_0466 +
9599389-9599662,9600324-9600643,9600950-9601186,
9601278-9601445,9601778-9601966
Length = 395
Score = 73.7 bits (173), Expect = 2e-13
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 1/143 (0%)
Frame = +2
Query: 92 AQIISGIEVAGSIXNDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYXXXXXXXXXXX 271
A II G VA I + ++V ++++ G P LA+V VG R DS Y
Sbjct: 98 ATIIDGKSVAEDIRFQIAEEVRQMKNA-VGHVPGLAVVLVGDRRDSESYVRYKIKGCEEV 156
Query: 272 XXXXXHIRLPRDITEIELLXKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKX 451
LP + TE ++ ++ NE PSVHGI+VQ+PL +D R+ A+S +K
Sbjct: 157 GIKSLLAELPGNCTEDVVVDSVSRFNEDPSVHGILVQLPLPQH--MDEERILSAISLEKD 214
Query: 452 VDXLNTINEGXXAVXDLS-XFIP 517
VD + +N G A+ F+P
Sbjct: 215 VDGFHPLNVGNLALRSRKPLFVP 237
Score = 33.1 bits (72), Expect = 0.30
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 535 CVELIKXTXXTIPXKNVVVLRRSPIVGTPVSELLKXXH 648
C+EL+ + + K+V V+ RS +VG P S LL+ H
Sbjct: 243 CLELLLQSGIELMGKHVTVIGRSKVVGLPTSLLLQRHH 280
>09_03_0089 + 12265916-12267232
Length = 438
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -3
Query: 198 ASLGSKPDHFERSLVTC*RRSFXIDPATSIPDIICAILAQRTVSLVDPIPTLNLKNS 28
ASL ++ DH S + R + DPA+S+P + AQ+ + P P +S
Sbjct: 182 ASLRTRFDHLFPSPASALRSAAAGDPASSLPPYLLRPFAQKLPTAASPFPPYTSSSS 238
>04_01_0039 + 455760-457631
Length = 623
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +2
Query: 335 ITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVS 439
++ LNE P+++G +V + DSD ++ + DAV+
Sbjct: 469 VSRLNEKPTINGTLVDITCDSDGKVEKF-IRDAVT 502
>09_02_0622 -
11310941-11311472,11312776-11312813,11312875-11312926,
11313891-11314270
Length = 333
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 287 HIRLPRDITEIELLXKITSLNESPSVHGIIV-QMPLDSDHA 406
HIR+PRD+ + TS++ + +VH V Q+P ++ A
Sbjct: 193 HIRVPRDVLRTAITTSATSVHLNITVHAASVGQLPPPTERA 233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,574,369
Number of Sequences: 37544
Number of extensions: 281264
Number of successful extensions: 501
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -