Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_F09
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    33   0.072
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.67 
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    27   3.6  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   4.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.3  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 32.7 bits (71), Expect = 0.072
 Identities = 17/55 (30%), Positives = 19/55 (34%)
 Frame = +3

Query: 540 PPP*RASQKSTLKSEVPXTXQDYKDTRXFPPAXXXXRPPVPTPPXTXXPCPXFPP 704
           PPP   S   T  S +P T      +   PP      P  PT P T       PP
Sbjct: 317 PPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPP 371



 Score = 29.5 bits (63), Expect = 0.67
 Identities = 16/54 (29%), Positives = 18/54 (33%)
 Frame = +3

Query: 543 PP*RASQKSTLKSEVPXTXQDYKDTRXFPPAXXXXRPPVPTPPXTXXPCPXFPP 704
           PP   S   T  S +P T      +   PP      P  PT P T       PP
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPP 317



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/51 (29%), Positives = 17/51 (33%)
 Frame = +3

Query: 540 PPP*RASQKSTLKSEVPXTXQDYKDTRXFPPAXXXXRPPVPTPPXTXXPCP 692
           PPP   S   T  S +  T      +   PP      P  PT P T    P
Sbjct: 371 PPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTP 421


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 19/66 (28%), Positives = 23/66 (34%)
 Frame = +1

Query: 544  PPDEHHKNRXSSQRCPXPXRTIKIPGXSPLXPPXCAXLXXPXPXPXYPVRPFXPSGKAXA 723
            PP   H       + P        P  +P  P   + L  P   P  PV    PS     
Sbjct: 1448 PPAPMHAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQL--PPAVPNVPVPSMIPSVAQQP 1505

Query: 724  PSSLAP 741
            PSS+AP
Sbjct: 1506 PSSVAP 1511


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 552 RASQKSTLKSEVPXTXQDYKDTRXFPPAXXXXRPPVPT 665
           R++Q+S   S  P T     +T   PPA     PPV T
Sbjct: 217 RSTQRSRSSSANPVTTPPVNNTLLTPPAPPVELPPVTT 254


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 20/65 (30%), Positives = 22/65 (33%)
 Frame = +1

Query: 547 PDEHHKNRXSSQRCPXPXRTIKIPGXSPLXPPXCAXLXXPXPXPXYPVRPFXPSGKAXAP 726
           P   H  + S+   P        P  S L PP  A      P P     P  PS     P
Sbjct: 110 PKLRHIGKSSASAAPPSAPAPPTP-QSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIP 168

Query: 727 SSLAP 741
           SSL P
Sbjct: 169 SSLPP 173



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
 Frame = +1

Query: 544 PPDEHHKNRXSSQRCPXPXRTIKIPGXSPLXPPXCAXLXXPXPXPXYPVRPF-XPSGKAX 720
           PP    + R  +   P P      P  +P  P     +    P P  P  P   P     
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPS 189

Query: 721 APSSLAP 741
            PS++ P
Sbjct: 190 LPSAVPP 196


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
 Frame = +3

Query: 543 PP*RASQKSTLKSEVPXTXQDYKDTRXFPPAXXXXR---PPVPTPPXTXXPC-PXFPP 704
           PP  +S ++      P      +     PP     R   PPVPTPP       P  PP
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPP 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,058
Number of Sequences: 5004
Number of extensions: 41877
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)