Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_F09
         (893 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    31   1.1  
U64845-3|AAC48032.2|  312|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical pr...    25   5.3  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    29   5.9  
AF022981-6|AAY86319.1|  202|Caenorhabditis elegans Hypothetical ...    29   5.9  
Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z71180-3|CAA94892.2|  763|Caenorhabditis elegans Hypothetical pr...    28   7.8  
X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit ...    28   7.8  
U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha nicot...    28   7.8  
AL021474-7|CAA16311.2|  763|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/64 (29%), Positives = 22/64 (34%)
 Frame = +1

Query: 589 PXPXRTIKIPGXSPLXPPXCAXLXXPXPXPXYPVRPFXPSGKAXAPSSLAPXCYXPLTXG 768
           P P      PG +P  PP  +    P P P  P R   P G    P    P  + P   G
Sbjct: 272 PMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMG 331

Query: 769 XXGP 780
              P
Sbjct: 332 GMPP 335


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/64 (29%), Positives = 22/64 (34%)
 Frame = +1

Query: 589 PXPXRTIKIPGXSPLXPPXCAXLXXPXPXPXYPVRPFXPSGKAXAPSSLAPXCYXPLTXG 768
           P P      PG +P  PP  +    P P P  P R   P G    P    P  + P   G
Sbjct: 282 PMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMG 341

Query: 769 XXGP 780
              P
Sbjct: 342 GMPP 345


>U64845-3|AAC48032.2|  312|Caenorhabditis elegans Hypothetical
           protein F45F2.11 protein.
          Length = 312

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
 Frame = +3

Query: 552 RASQKSTLKSEVPXTXQDYKDTRX--FPPAXXXXRPPVPTPPXTXXPCPXFPPFRESVXP 725
           R ++    K E      DYK+     F P     RPP+P P     P P F     S+ P
Sbjct: 193 RKNEGLDFKHETFPRDYDYKEKTLSTFIPPRIARRPPIPPPQFFFPPSPHFSREPHSLPP 252


>Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical
           protein Y49E10.10 protein.
          Length = 425

 Score = 25.0 bits (52), Expect(2) = 5.3
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 651 PPVPTPPXTXXPCPXFPPFRESV 719
           PP PTP     P P  PP   +V
Sbjct: 255 PPAPTPVPNPVPSPPPPPANTTV 277



 Score = 22.2 bits (45), Expect(2) = 5.3
 Identities = 13/44 (29%), Positives = 15/44 (34%)
 Frame = +3

Query: 540 PPP*RASQKSTLKSEVPXTXQDYKDTRXFPPAXXXXRPPVPTPP 671
           PP  +A    T K+  P T      T    P       P P PP
Sbjct: 193 PPTTKAPPPPTTKAPPPPTTNKEVTTVAPVPKPAPVTAPAPNPP 236


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/63 (30%), Positives = 22/63 (34%)
 Frame = +3

Query: 537 APPP*RASQKSTLKSEVPXTXQDYKDTRXFPPAXXXXRPPVPTPPXTXXPCPXFPPFRES 716
           +PPP    +KS      P      +  R  PP     R P  TPP      P  PP  E 
Sbjct: 121 SPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEP 180

Query: 717 VXP 725
             P
Sbjct: 181 RNP 183



 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/50 (32%), Positives = 19/50 (38%)
 Frame = +1

Query: 547 PDEHHKNRXSSQRCPXPXRTIKIPGXSPLXPPXCAXLXXPXPXPXYPVRP 696
           P   H +  +S   P P R  +  G SP  PP       P P    P RP
Sbjct: 111 PAPQHGDHEASPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRP 160


>AF022981-6|AAY86319.1|  202|Caenorhabditis elegans Hypothetical
           protein W03F9.11 protein.
          Length = 202

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 660 PTPPXTXXPCPXFPPFRESVXPFLISPXLLR 752
           P PP    P P F PFR +  PF     +LR
Sbjct: 124 PPPPPPPKPSPEFLPFRPTNQPFFDDLAVLR 154


>Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical
           protein T08G11.5 protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 474 SHVLSCVIXLILWITVLPPLSELIPLAA 391
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>Z71180-3|CAA94892.2|  763|Caenorhabditis elegans Hypothetical
           protein F22E12.1 protein.
          Length = 763

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +3

Query: 570 TLKSEVPXTXQDYKDT--RXFPPAXXXXRPPVPTPPXTXXPCPXFPPFRESVXPFLIS 737
           +L++E   T +  +DT  R +       RPPV  PP    P    P   E+  P L++
Sbjct: 351 SLQNEAEETQRRIQDTMRRNYFEQARYQRPPVQMPPPPPPPQQNSPSVNENYHPELVN 408


>X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit of
           nicotinic acetylcholinereceptor protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 474 SHVLSCVIXLILWITVLPPLSELIPLAA 391
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit precursor
           protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 474 SHVLSCVIXLILWITVLPPLSELIPLAA 391
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>AL021474-7|CAA16311.2|  763|Caenorhabditis elegans Hypothetical
           protein F22E12.1 protein.
          Length = 763

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +3

Query: 570 TLKSEVPXTXQDYKDT--RXFPPAXXXXRPPVPTPPXTXXPCPXFPPFRESVXPFLIS 737
           +L++E   T +  +DT  R +       RPPV  PP    P    P   E+  P L++
Sbjct: 351 SLQNEAEETQRRIQDTMRRNYFEQARYQRPPVQMPPPPPPPQQNSPSVNENYHPELVN 408


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,835,231
Number of Sequences: 27780
Number of extensions: 279161
Number of successful extensions: 1083
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)