Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_F06
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.61 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.61 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.5  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    27   2.5  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   10.0 
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         25   10.0 

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 628 PPXPPPPLXXXPXPPPRPKXP 690
           PP PPPP    P  PP P  P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 628 PPXPPPPLXXXPXPPPRPKXP 690
           PP PPPP    P   P P  P
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 628 PPXPPPPLXXXPXPPPRPKXP 690
           PP PPPP      PPP P  P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782



 Score = 29.1 bits (62), Expect = 0.81
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +1

Query: 625 GPPXPPPPLXXXPXPPPRPKXPXXGV 702
           GPP PPPP       PP P  P   V
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPPPAV 785



 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 631 PXPPPPLXXXPXPPPRP 681
           P PPPP    P P P P
Sbjct: 732 PPPPPPAVIVPTPAPAP 748



 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 628 PPXPPPPLXXXPXPPPRP 681
           P  PP P+   P PPP P
Sbjct: 750 PVPPPAPIMGGPPPPPPP 767


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 631  PXPPPPLXXXPXPPPRPKXP 690
            P PPPP    P PP  P  P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMP 1724



 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
 Frame = +1

Query: 628  PPXPPPPLXXXPXP--PPRPKXP 690
            P  PPPP+   P P  PP P  P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGP 1727


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 126 VVDFLIGILF*INISCVFIQQARKSNSNLK 37
           VVDF++GI+  I ++CVF      S S L+
Sbjct: 564 VVDFVVGIVIGIIMACVFFVIQASSRSALR 593


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -3

Query: 689 GXLGRGGGXGXXXXGGGGXGGP 624
           G  G GGG G    G GG GGP
Sbjct: 250 GLGGFGGGPGGFGGGPGGHGGP 271


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +1

Query: 628  PPXPPPPLXXXPXPPPRPKXP 690
            PP P P +   P PPP    P
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPP 1218


>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -1

Query: 298 SGGGSIPVFRAFGKRSWVSWVRLGKHQSXFIQE 200
           S   S+PV   FG+    +W+  G+    F+ E
Sbjct: 374 SANESLPVLEIFGRSLTPNWITWGREPLLFMHE 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,922,669
Number of Sequences: 5004
Number of extensions: 28970
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)