Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_F03
         (864 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    31   1.6  
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973...    28   8.4  
07_01_0862 - 7172083-7172931                                           28   8.4  

>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 21/75 (28%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
 Frame = +1

Query: 640  PXPXXKVPRPRIPLX*GLIXSXHDXXXXXXXXHPPPTMPXKKCLIGXXLXRXGPFAPLXX 819
            P P    P P +P     + S            PPP  P     +   L    P  PL  
Sbjct: 1131 PLPLDAPPPPPLPEGPPPLPSDSPPCQPPLPPSPPPATPPPPPPLSPSLPPPPPPPPLPS 1190

Query: 820  -PXPKPS*PPXPAXP 861
             P P+P+ PP P  P
Sbjct: 1191 GPPPQPAPPPLPIQP 1205


>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
            21997494-21997838,21998323-21999240,21999312-21999640,
            21999709-21999832,21999901-22000071,22000188-22001648,
            22002647-22002910,22003866-22004189
          Length = 1831

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = -1

Query: 204  PPGLRSSADRAESQHQREDEAQNTYEIHFTEIL*C-RRIQNSNTI--SFDANAKNDQILR 34
            PP L  ++   E   Q  +E  ++ E+ FTE+L    +I     I  SFD N K  ++ R
Sbjct: 1073 PPKLDFTSQHQEWVEQEANEVVDSAELLFTEVLNALHQISEGRPITGSFDGNMKILELRR 1132

Query: 33   N 31
            N
Sbjct: 1133 N 1133


>07_01_0862 - 7172083-7172931
          Length = 282

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
 Frame = +1

Query: 739 PPPTMPXKKCLI--------GXXLXRXGPFAPLXXPXPKPS*PPXPAXP 861
           PPP  P KK ++           L    P  P   P P PS PP P  P
Sbjct: 147 PPPLPPRKKAMLFPLPLPPRKKPLLYPPPLPPKKKPLPPPSPPPQPPLP 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,994,427
Number of Sequences: 37544
Number of extensions: 353547
Number of successful extensions: 761
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)