Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_F01
         (826 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0981 + 9931542-9931606,9931779-9933105                           30   2.6  
03_06_0471 + 34169562-34169892,34170121-34170347                       28   7.8  
01_01_0680 + 5217633-5219072                                           28   7.8  

>12_01_0981 + 9931542-9931606,9931779-9933105
          Length = 463

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +3

Query: 171 PTQETATNLLTTARYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFP 335
           PT E  T++      I  PP  + P    Y P++   ++  +PQ  PY   TPFP
Sbjct: 56  PTTERNTSVFFNTSTIPPPPPPHFPQPPQYTPLNQ--FFPYQPQ-YPYQPHTPFP 107


>03_06_0471 + 34169562-34169892,34170121-34170347
          Length = 185

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 225 PPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFPG 338
           PP  Y P+  GY P   GAY       +P + P  +PG
Sbjct: 68  PPSGYPPSQGGYPP---GAYPPSGYPQQPGYPPAGYPG 102


>01_01_0680 + 5217633-5219072
          Length = 479

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +1

Query: 205 PPXTSLILPKTTTLMETA------TNLSTTVHITWTVPKADLTSSLPLSL 336
           PP T+L+LP+TTT    A      ++ S+ +H+  T   A  TS L L L
Sbjct: 17  PPPTALLLPRTTTTTAGAAPAPRRSSASSRLHLLLTAALAVATSYLLLIL 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,960,274
Number of Sequences: 37544
Number of extensions: 292501
Number of successful extensions: 590
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)