Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_E24
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   1.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    24   1.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect(2) = 1.6
 Identities = 11/37 (29%), Positives = 12/37 (32%)
 Frame = +1

Query: 562 PPPPXNXXXXXFFFXPXXXXTXXXPPPXXPPXXXRXP 672
           PPPP +         P        PPP   P   R P
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQP 376



 Score = 21.8 bits (44), Expect(2) = 1.6
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +1

Query: 397 RNDYSXPAGKPXXXXPIPPPNXPP 468
           RN    P G       +PPP  PP
Sbjct: 320 RNRGKPPIGNGSSNSSLPPPPPPP 343


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.8 bits (49), Expect(2) = 1.9
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +2

Query: 578 TXXPXXFFXPXXXXXXXXPPPPXXPPXXXGA 670
           T  P     P        PPPP  PP   GA
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPPPPGVAGA 773



 Score = 22.2 bits (45), Expect(2) = 1.9
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +2

Query: 746 PPPXFXXXPPPPXXXXPP 799
           PPP      PPP    PP
Sbjct: 766 PPPGVAGAGPPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,884,409
Number of Sequences: 5004
Number of extensions: 28340
Number of successful extensions: 67
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)