Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_E23
         (884 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0515 + 14930736-14932697                                         32   0.53 
03_02_0037 - 5192935-5192970,5193057-5193140,5193261-5193371,519...    31   0.93 
04_04_0347 + 24564589-24565296                                         29   3.8  
01_01_0659 - 5021159-5021266,5021364-5021494,5021619-5021785,502...    29   5.0  

>05_03_0515 + 14930736-14932697
          Length = 653

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 90  IALVLCGLLAAVSAAPQYYHGSSHWPYHHYDPFSPYVRESM-LDTHSLWSN-LGQRN 254
           + L +C +   V  +P  +    +W YH     + YV +S+  ++ S WSN LGQ N
Sbjct: 308 LCLEVCAIFFMVMMSPWTWASLQYWKYHRLADAAWYVFKSLQTESMSWWSNSLGQYN 364


>03_02_0037 -
           5192935-5192970,5193057-5193140,5193261-5193371,
           5193460-5193834
          Length = 201

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 22/72 (30%), Positives = 31/72 (43%)
 Frame = +3

Query: 117 AAVSAAPQYYHGSSHWPYHHYDPFSPYVRESMLDTHSLWSNLGQRNATLGRHDEGAVVEV 296
           ++ S     +HG +  PY+H D +S    E  L   S  S+ G R      +D+GA    
Sbjct: 24  SSYSCGTARFHGKAQQPYYHCD-YSEDAEEDDLSMISDASS-GPRQQCSTGNDDGAAAAA 81

Query: 297 PQHYKRRTRGRR 332
                 R RGRR
Sbjct: 82  AHANAARRRGRR 93


>04_04_0347 + 24564589-24565296
          Length = 235

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 87  MIALVLCGLLAAVSAAPQYYHGSSHWPY-HHYDPF 188
           M  L+   LLAA SAA   +H  ++ PY HH+ P+
Sbjct: 5   MSMLLASSLLAAASAARADHHSPAYAPYPHHHAPW 39


>01_01_0659 -
           5021159-5021266,5021364-5021494,5021619-5021785,
           5021950-5022065,5022226-5022381,5022570-5022678,
           5023153-5023262,5023807-5023992,5024077-5024667
          Length = 557

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 292 KFPSIINEGRVEGDKYQISIHLPG 363
           K   ++ E +VEGD Y + +H PG
Sbjct: 216 KDDEVVKEEKVEGDGYSLGLHAPG 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,242,240
Number of Sequences: 37544
Number of extensions: 397617
Number of successful extensions: 1015
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)