Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_E23
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74046-1|CAA98556.2|  178|Caenorhabditis elegans Hypothetical pr...    34   0.16 
Z79756-4|CAB02116.2|  478|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF016687-3|AAC48090.1|  375|Caenorhabditis elegans Paralysed arr...    29   5.8  

>Z74046-1|CAA98556.2|  178|Caenorhabditis elegans Hypothetical
           protein ZC116.1 protein.
          Length = 178

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 24/87 (27%), Positives = 38/87 (43%)
 Frame = +3

Query: 96  LVLCGLLAAVSAAPQYYHGSSHWPYHHYDPFSPYVRESMLDTHSLWSNLGQRNATLGRHD 275
           L LC LLA  SA   YY  S + PY++Y     Y   ++  T    + + Q+    G   
Sbjct: 5   LALCSLLAVASAQYLYYPTSYYTPYYYY-----YPTAAVAGT----TGVAQQTQAGGASQ 55

Query: 276 EGAVVEVPQHYKRRTRGRRQVSDIYSP 356
           +    + PQ  ++  +G +Q    Y P
Sbjct: 56  QAYAQQQPQQNQQYAQGTQQQQQQYYP 82


>Z79756-4|CAB02116.2|  478|Caenorhabditis elegans Hypothetical
           protein F53C11.7 protein.
          Length = 478

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 129 AAPQYYHGSSHWPYHHYDPFSPYVRESMLDTHSLWSNLGQRNATLGR 269
           AAP     SSH  +HH + +  Y   S   + S  SN+G  NA+ G+
Sbjct: 7   AAPSSSTSSSHLMHHHSNNYPSYTNPSA--SSSNHSNMGHPNASTGQ 51


>AF016687-3|AAC48090.1|  375|Caenorhabditis elegans Paralysed arrest
           at two-fold protein6 protein.
          Length = 375

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 253 MQHLDDMMKELSLKFPSIINEGRVEGDKYQISIHLPGLRTERHQRESEKWSAD 411
           +Q L + ++++ ++ P +      +  K QI +     R     RE EKWSAD
Sbjct: 133 IQKLLEKLEQIRIEVPEVSQSEEGQRQKLQIVVQTAN-RILGQPREQEKWSAD 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,908,112
Number of Sequences: 27780
Number of extensions: 327913
Number of successful extensions: 866
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)