Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_E22
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos...    45   2e-05
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac...    43   7e-05
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    40   5e-04
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   4.7  

>SPAC1783.04c |hst4||Sir2 family histone deacetylase
           Hst4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 19/46 (41%), Positives = 32/46 (69%)
 Frame = +1

Query: 202 DKSSDFSKFRVALKSAKEIVILSGAGISAESGIPTFRGAGGLWEEI 339
           +++ D S    A++ AK IV+++GAGIS ++GIP FR + GL+  +
Sbjct: 42  NENVDLSPLVSAIRKAKRIVVVTGAGISCDAGIPDFRSSEGLFSSL 87


>SPCC132.02 |hst2||Sir2 family histone deacetylase
           Hst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 42.7 bits (96), Expect = 7e-05
 Identities = 54/233 (23%), Positives = 85/233 (36%), Gaps = 9/233 (3%)
 Frame = +1

Query: 202 DKSSDFSKFRVALKSAK--EIVILSGAGISAESGIPTFRGAG-GLWEEISSFGLSNXRSF 372
           D S    K    +K  K  +I ++ GAGIS  +GIP FR    G++  +  F L    + 
Sbjct: 10  DSSKHLEKVASLIKEGKVKKICVMVGAGISTAAGIPDFRSPETGIYNNLQRFNLPYAEAV 69

Query: 373 *RKSKLSMGILPLQKRGGQ---QRRKPNAGHFGYC*NSKXTMXFPKKIT--VITQNVGWV 537
              S       P  +   +   ++ +P   H+         +   K++     TQN+  +
Sbjct: 70  FDLSYFRKNPRPFYELAHELMPEKYRPTYTHYFI------RLLHDKRLLQKCYTQNIDTL 123

Query: 538 T-CPEQETKRLIXLHXNLYQNSMYKCXEXLXNNDXPICXAXANRGAPXSNMVGSDIPVKL 714
                   K LI  H +   +   +C E         C                 I  K 
Sbjct: 124 ERLAGVPDKALIEAHGSFQYSRCIECYEMAETEYVRAC-----------------IMQKQ 166

Query: 715 LPXCKKAHCGALLTPHIVWFXESLEHDILEAAEHAMSTCDVCLXVGTSSVXYP 873
           +P C    C  L+ P IV++ E L     E  E     CD+ L +GTS + +P
Sbjct: 167 VPKCNS--CKGLIKPMIVFYGEGLPMRFFEHMEKDTKVCDMALVIGTSLLVHP 217


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 19/40 (47%), Positives = 24/40 (60%)
 Frame = +1

Query: 238 LKSAKEIVILSGAGISAESGIPTFRGAGGLWEEISSFGLS 357
           LK AK +V+L GAGIS   GI  FR   G +  ++  GLS
Sbjct: 153 LKKAKNVVVLVGAGISTSLGILDFRSDNGFYARLARHGLS 192


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 50  DFSINRHNIKQNKMNIYYLNL*PLYDVP*FIXKH*IRESFLGYINK 187
           D+ I+ H I  N   +  L+L    DV  F   H +++SF  YI K
Sbjct: 58  DYFIDGHKIHVNPNAVEPLHLRRNADVVGFSLPHGVKQSFENYIQK 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,016,784
Number of Sequences: 5004
Number of extensions: 53692
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)