Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_E21
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    30   0.38 
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    29   1.2  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    27   2.7  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.6  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    27   3.6  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    27   4.7  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    26   6.2  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    26   6.2  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   8.2  

>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +2

Query: 263 SIIQNVVNNLIIDKRRNTMEYCYKLWVGNGQEIVRKYF 376
           +II   V+N I+D+  +  ++C ++W G   + +R ++
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFY 284


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +1

Query: 115 MLAASAGVV--ELSADTSNQDLXEKLYNSILTGDYDSAVRQSLEYESQGQG 261
           ++ A+AG+    LS +  N+D+  K+    L G Y +A      ++ QG+G
Sbjct: 91  VMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKG 141


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
 Frame = +3

Query: 678 PXPGSQXFFPA---PPKYEKXXSWFLNLPIA 761
           P  GS  F+ A   PPKY    SWFL   +A
Sbjct: 107 PTSGSLYFWTAYLSPPKYRAFLSWFLGYVLA 137


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 240 FQALTDSTVVVAGEDAVVQFLLEVLV 163
           F  +T   V+V  EDAVV+F+L +LV
Sbjct: 181 FLGVTVQYVMVLPEDAVVEFVLTILV 206


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
 Frame = -3

Query: 379 WEVLSNNFLS--VADPQL---VAVLHGVPSLVNDQVVNYILD 269
           W+VL +++L+  ++ P     V  LHGV + VN  V +YI D
Sbjct: 188 WDVLFHDYLNETLSQPAFSFNVPDLHGVDNKVNQYVFDYIKD 229


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -3

Query: 355 LSVAD--PQLVAVLHGVPSLVNDQVVNYILDDGA-LGLGSHIPSSD 227
           LSV D     V VL+GVPS+     + Y + +G  + L  HIP+ +
Sbjct: 279 LSVLDYLSDFVCVLYGVPSMYGVVTLPYSVREGINIFLDGHIPTEN 324


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 128 ARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAW 238
           AR SLNY ++   + SRRN    ++P      S + W
Sbjct: 622 ARESLNYLKSFNKQLSRRNAPDINNPIADFQNSFQNW 658


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 266 IIQNVVNNLIIDKRRNTMEYCYKLWVGNGQEIVR 367
           +++++  NL I    N +EY   LW  NG  I +
Sbjct: 447 VLKDIFFNLQIGVTFNILEYLRHLWSNNGDAIAK 480


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 23/82 (28%), Positives = 37/82 (45%)
 Frame = +2

Query: 170 TSRRNCTTASSPATTTVLSVRAWNMRAKAKGSIIQNVVNNLIIDKRRNTMEYCYKLWVGN 349
           TS  N T +S P T    S    N+      S  Q VVN  I D   +  +  + L  G+
Sbjct: 371 TSSSNSTNSSIPTTYPSNSTTYQNITTSYPWS--QPVVN--ITDYLSDNGDGHFVL-AGD 425

Query: 350 GQEIVRKYFPLNFRLIMAGNYV 415
           G + +  ++ +N+  I +G Y+
Sbjct: 426 GNQTIGDFYVMNWTTIASGEYL 447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,175,930
Number of Sequences: 5004
Number of extensions: 59046
Number of successful extensions: 162
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)