Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_E20
         (1050 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.27 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.83 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.27
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = +2

Query: 932  PXPPPXPXXXGGGGXXXXHNPPPXXXGXXXXPPPPP 1039
            P PPP P   G         PPP   G    PPPPP
Sbjct: 750  PVPPPAPIMGG----PPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.9 bits (59), Expect = 2.5
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +2

Query: 740 PPPPPXXXFFXXXXXXXPPPPPXGGGG 820
           PPPPP            PPPPP    G
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 27.5 bits (58), Expect = 3.3
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +2

Query: 932  PXPPPXPXXXGGGGXXXXHNPPPXXXGXXXXPPPPPXG 1045
            P PPP               PPP        PPPPP G
Sbjct: 732  PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769



 Score = 27.5 bits (58), Expect = 3.3
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +1

Query: 943  PXPXXXGXGGXXXXPQPPPXXXWXXXXPPPPXP 1041
            P P      G    P PPP        PPPP P
Sbjct: 750  PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.5 bits (58), Expect = 3.3
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +2

Query: 740 PPPPPXXXFFXXXXXXXPPPPPXGGGG 820
           PPPPP            PPPP    GG
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 26.6 bits (56), Expect = 5.8
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 740 PPPPPXXXFFXXXXXXXPPPPP 805
           PPPPP            PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 7.7
 Identities = 13/44 (29%), Positives = 14/44 (31%)
 Frame = +1

Query: 910  KKTXKKXXXXPPXPXXXGXGGXXXXPQPPPXXXWXXXXPPPPXP 1041
            +K   K    PP             P PPP        PPPP P
Sbjct: 725  QKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 26.2 bits (55), Expect = 7.7
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -1

Query: 972 PPPPXXXGXGGGXGXFFXCFFXXPPPPPXPP 880
           PPPP   G  G            PPPPP PP
Sbjct: 762 PPPPPPPGVAGAG---------PPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 740 PPPPPXXXFFXXXXXXXPPPPP 805
           PPPPP    F       PPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.2 bits (55), Expect = 7.7
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = -1

Query: 903 PPPPPXPPXXKKKXXXXXXGFXXXXPXXPPPPXG 802
           PPPPP PP           GF       PPPP G
Sbjct: 9   PPPPPPPP-----------GFEPPSQPPPPPPPG 31



 Score = 26.2 bits (55), Expect = 7.7
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 985  PQPPPXXXWXXXXPPPPXPRG 1047
            P PPP        PPPP P G
Sbjct: 11   PPPPPPGFEPPSQPPPPPPPG 31


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 13/39 (33%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
 Frame = -1

Query: 903 PPPPPXPPXXKK-KXXXXXXGFXXXXPXXPPPPXGGGGG 790
           PPPPP P    + K            P  PPPP     G
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAG 349



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 21/85 (24%), Positives = 23/85 (27%), Gaps = 1/85 (1%)
 Frame = -1

Query: 1050 PPPXGGGGGXXXXPXXXGGGLWXXXXPPPPXXXGXGGGXGXFFXCFFXXPPPPPX-PPXX 874
            PPP          P   G        PPPP      G            PPPPP   P  
Sbjct: 313  PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPST 372

Query: 873  KKKXXXXXXGFXXXXPXXPPPPXGG 799
             ++            P  PPP   G
Sbjct: 373  GRQPPPLSSSRAVSNPPAPPPAIPG 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,342,398
Number of Sequences: 5004
Number of extensions: 34671
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 551223336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)