Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_E18
(1151 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.025
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.53
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.2
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 2.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 2.8
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 3.7
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 3.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.9
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 6.5
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 27 6.5
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.7 bits (76), Expect = 0.025
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 938 PPPPXXLXXXGXPXPGPXPYPPPXAXXXXPSXAPXP 1045
PPPP P P P P PPP P P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 31.9 bits (69), Expect = 0.17
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = +2
Query: 920 PRXXXPPPPPXXLXXXGXPXPGPXPYPPPXAXXXXPSXAPXPVXPP 1057
P PPPPP G P P P PP + AP P P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801
Score = 28.7 bits (61), Expect = 1.6
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 992 PYPPPXAXXXXPSXAPXPVXPP 1057
P PPP P+ AP PV PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPP 754
Score = 28.7 bits (61), Expect = 1.6
Identities = 19/50 (38%), Positives = 20/50 (40%)
Frame = +2
Query: 914 TPPRXXXPPPPPXXLXXXGXPXPGPXPYPPPXAXXXXPSXAPXPVXPPXA 1063
TP P PPP + G P P P PPP P P P PP A
Sbjct: 743 TPAPAPIPVPPPAPIM--GGPPPPP---PPPGVAGAGP---PPPPPPPPA 784
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.53
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 986 PXPYPPPXAXXXXPSXAPXPVXPPXA 1063
P P PPP + PS P P PP A
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSA 1730
Score = 29.5 bits (63), Expect = 0.92
Identities = 14/46 (30%), Positives = 17/46 (36%)
Frame = +2
Query: 917 PPRXXXPPPPPXXLXXXGXPXPGPXPYPPPXAXXXXPSXAPXPVXP 1054
PP+ P PPP + P P P PP A + P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Score = 27.5 bits (58), Expect = 3.7
Identities = 15/48 (31%), Positives = 17/48 (35%)
Frame = +2
Query: 914 TPPRXXXPPPPPXXLXXXGXPXPGPXPYPPPXAXXXXPSXAPXPVXPP 1057
TPP PP P P P PPP + P+ P PP
Sbjct: 1689 TPPVRPQSAAPPQMSAPT--PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.1 bits (62), Expect = 1.2
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +2
Query: 917 PPRXXXPPPPPXXLXXXGXPXPGPXP 994
PP PPPPP P P P P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.2 bits (55), Expect = 8.6
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 980 PGPXPYPPPXAXXXXPSXAPXPVXP 1054
PG P PPP PS P P P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 27.9 bits (59), Expect = 2.8
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = -3
Query: 1056 GGXTGXGAXEGXXXXAXG-GGYGXGPGXGXPQXXXXXGGGGGXXXRG 919
GG G G G G GG+G GPG G GGG G G
Sbjct: 205 GGFGGFGGFGGEGHHHGGHGGFGGGPG-GFEGGPGGFGGGPGGFGGG 250
Score = 26.2 bits (55), Expect = 8.6
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = -3
Query: 1056 GGXTGXGAXEGXXXXAXGGGYGXGPGXGXPQXXXXXGGGGG 934
GG G G G GG +G GPG GG GG
Sbjct: 221 GGHGGFGGGPGGFEGGPGG-FGGGPGGFGGGLGGFGGGPGG 260
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 2.8
Identities = 17/51 (33%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Frame = +2
Query: 917 PPRXXXPPPPPXXLXXXGXPXPGPXPYPPPXA--XXXXPSXAPXPVXPPXA 1063
P P PPP P G P PPP PS PV P A
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTA 1234
Score = 26.2 bits (55), Expect = 8.6
Identities = 13/47 (27%), Positives = 15/47 (31%)
Frame = +2
Query: 917 PPRXXXPPPPPXXLXXXGXPXPGPXPYPPPXAXXXXPSXAPXPVXPP 1057
PP PP P + P P P P + P P PP
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.5 bits (58), Expect = 3.7
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = -3
Query: 1044 GXGAXEGXXXXAXGGGYGXGPGXGXPQXXXXXGGGGGXXXRGG 916
G G G A GGG G G + G GG RGG
Sbjct: 24 GRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.5 bits (58), Expect = 3.7
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 935 PPPPPXXLXXXGXPXPGPXPYPPP 1006
PPPPP L G P P PP
Sbjct: 1883 PPPPPMALPKAGPPSAAPTSALPP 1906
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 4.9
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Frame = +2
Query: 917 PPRXXXPPPPPXXLXXXGXPXPGP-XPYPPPXAXXXXPSXAP 1039
PP PP P L P P P P P + PS AP
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAP 165
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 4.9
Identities = 11/37 (29%), Positives = 14/37 (37%)
Frame = +2
Query: 944 PPXXLXXXGXPXPGPXPYPPPXAXXXXPSXAPXPVXP 1054
PP + P P P P P P+ P P+ P
Sbjct: 241 PPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAP 277
Score = 26.6 bits (56), Expect = 6.5
Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Frame = +2
Query: 935 PPPPPXXLXXXGXPXPGPXPYP-PPXAXXXXPSXAPXPVXP 1054
PP PP P P P PP A P+ AP P P
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 923 RXXXPPPPPXXLXXXGXPXPGPXPYPPP 1006
R P PP P P P P PPP
Sbjct: 217 RAVSPEIPPTYTPKQADPLPAPPPPPPP 244
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +2
Query: 914 TPPRXXXPPPPPXXLXXXGXPXPGPXPYPPP 1006
TP R PPPP P P P PP
Sbjct: 411 TPARPTESPPPPPISSSSTTPRPDDKPSLPP 441
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.138 0.446
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,432,982
Number of Sequences: 5004
Number of extensions: 15694
Number of successful extensions: 105
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 615584238
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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