Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_E14
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    28   1.4  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    26   7.5  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    25   9.9  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    25   9.9  

>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 391 PHDWADYEPDNAGDNENCILMNPDGNFADVN 483
           PH W DYE ++    +NC L + +   ADV+
Sbjct: 174 PHCWVDYESNDIESVQNCWLGDENLLLADVD 204


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 520 KTSTVAMASCGSVDSEYVLSKDTGNCYKFHKVP 618
           KTS V      ++    ++ KD+ + YK++K P
Sbjct: 353 KTSNVHFVPISAISGTNLIQKDSSDLYKWYKGP 385


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 165 DVPEVCIVISKLLTVQISDGQNQNRGWPLPLSCLRFC 55
           DV +VC   +K   +QIS   ++ +G  +PLS +  C
Sbjct: 491 DVEKVCACSNK--NIQISFSSDRTKGILVPLSAIMTC 525


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 609 VELVTITSVFAENIFTVNAATRSHSNS*SL-FLIANVLERLSTV 481
           +EL ++     +++FTV A TR   N+ S+ + I     RL+++
Sbjct: 428 IELSSLLQDILQDLFTVRALTRHSKNNRSISYQIIGFFTRLNSI 471


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,307,039
Number of Sequences: 5004
Number of extensions: 68326
Number of successful extensions: 168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)