Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_E14
         (828 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    25   0.65 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    25   1.1  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    23   3.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.0  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 619 EELCGTCNNYQCLC*EHIHCQRCHK 545
           +ELCG   NY  +C E + C  C+K
Sbjct: 66  DELCGGPQNYLGICAEGMQCS-CNK 89


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -1

Query: 261 VQRRCQNGPFKMTSQXSLXPVSRDLLKLQPPVD-VPEVCIVISKLLT 124
           V+R   N    +    S  PV+ +L KL PP D V   C V+   L+
Sbjct: 498 VKRELGNDTVIVMMNFSKNPVTVNLTKLHPPADLVVYACNVVGSGLS 544


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 645 GHVGTRPGTRNFVELVTITSVFAENIFTVNAAT 547
           G  G  PGT +      + ++F   IFT  A+T
Sbjct: 65  GFFGVAPGTSSATNPNAMKTIFKNTIFTNVAST 97


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 307 KSCSLLEITCRSSTHRPEEMPKR 239
           + CS+  IT  +ST  P+  P+R
Sbjct: 401 QKCSIESITSVNSTSSPKPFPRR 423


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 661 RLLLNRPCRHAT 626
           +LLL+ PC+H T
Sbjct: 63  KLLLSNPCKHPT 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,500
Number of Sequences: 438
Number of extensions: 4686
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)