Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_E13
         (869 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.18 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.30 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.5  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   8.5  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect(2) = 0.18
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 696 PPPPPPPPXXXXP 734
           P PPPPPP    P
Sbjct: 341 PAPPPPPPSSSGP 353



 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 697 PPPPPPPPXXXXP 735
           P PPPPPP    P
Sbjct: 341 PAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 838 PPXXXPPPPP 867
           PP   PPPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 21.0 bits (42), Expect(2) = 0.18
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +3

Query: 681 GGXXXPPPPPPPP 719
           G    PP P PPP
Sbjct: 333 GDSDTPPKPAPPP 345


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 696  PPPPPPPP 719
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 26.6 bits (56), Expect = 0.30
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 697  PPPPPPPP 720
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 696  PPPPPPPP 719
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 697  PPPPPPPP 720
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 22.2 bits (45), Expect = 6.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 684  GXXXPPPPPP 713
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864



 Score = 22.2 bits (45), Expect = 6.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 685  GXXXPPPPPP 714
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/31 (32%), Positives = 10/31 (32%)
 Frame = +3

Query: 681 GGXXXPPPPPPPPXXXXPPXPXXXXXPPPPP 773
           G    P   P  P    PP P     P  PP
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 161 SFDECMHIGEADSQQDNQQLVHFGY 87
           S D  + +   D+Q+DN Q++ + Y
Sbjct: 298 SKDSLVFVDNHDTQRDNPQILTYKY 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,862
Number of Sequences: 438
Number of extensions: 9494
Number of successful extensions: 35
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)