Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_E12
         (884 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0299 - 17051570-17052474,17053542-17053755                       32   0.70 
09_04_0681 + 19416207-19416515,19416537-19416756,19416848-19417455     32   0.70 
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358...    30   2.1  
10_08_0223 - 15986763-15987575                                         29   3.8  
12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406     28   8.7  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.7  
03_06_0218 - 32442904-32443347,32444426-32444626,32446584-32447156     28   8.7  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     28   8.7  

>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +1

Query: 673 FTRIPGPPFLPFRESVAPFSYLTP*XIXTSXGXPVPLPXW 792
           F   P PPFLPF   + P  +LTP         P PLP W
Sbjct: 231 FLTPPPPPFLPF--PLPPIPFLTP-PSPPPPAFPFPLPPW 267


>09_04_0681 + 19416207-19416515,19416537-19416756,19416848-19417455
          Length = 378

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 651 SCSRTWPLYPHTWSXLSPLPGKRGPLLIP 737
           SCS    LY H W   SP P   GP ++P
Sbjct: 233 SCSSATSLYRHQWGRPSPPPPAAGPKILP 261


>06_01_0501 -
           3587390-3587528,3587922-3588031,3588122-3588187,
           3588293-3588410,3588499-3588554,3588647-3588766,
           3588937-3589035,3589443-3589490,3589534-3589545,
           3590353-3590418,3591412-3591471,3592061-3592162,
           3592405-3592426,3592959-3593041,3593166-3593293,
           3593775-3593881,3594376-3594845
          Length = 601

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 678 PHTWSXLSPLPGKRGPLLIPH-PVXYPHFRW*XRSPPXLG 794
           P T + L P P +  PLL+P   V    F W  RSPP  G
Sbjct: 41  PTTRAPLLPSPPRLPPLLVPFAAVPARSFSWYPRSPPPAG 80


>10_08_0223 - 15986763-15987575
          Length = 270

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 28/104 (26%), Positives = 33/104 (31%), Gaps = 1/104 (0%)
 Frame = -1

Query: 785 GRGTGLPXEVXIXYGVRYEKGATLSRKGRKGGPGMRVKRPGSGTGEXHG-GELXRGKXLV 609
           G G+     V +  G  Y  G      G  GG        G+G G   G GE      + 
Sbjct: 115 GSGSSASAPVALSSGGNYATGDGEGGGGGGGGGSNGGSGYGAGAGVGQGAGESGSSIAMA 174

Query: 608 SL*SCXGXATSDLXVDFXDARQGGGAYGKTPATRPFYGSWPFAG 477
              S  G               GGG +G  PA  P YG    AG
Sbjct: 175 PSPSSGGDYNGGYADAAGGGGGGGGGHGGGPAASPSYGVGAGAG 218


>12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406
          Length = 351

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 743 GVRYEKGATLSRKGRKGGPGMRVKRPGSGTGEXHG 639
           G R  +G +  R G  GG G+R  RPG   G   G
Sbjct: 26  GRRLRRGLSGQRPGHDGGGGLRGWRPGRDGGGLRG 60


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 294 NESAN---ARGEAVCVLGALPLPRSLTRCAR 377
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>03_06_0218 - 32442904-32443347,32444426-32444626,32446584-32447156
          Length = 405

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
 Frame = -1

Query: 719 TLSRKGRKGGPGMRVKRPGSGTGEXHGGELXRGKXLVSL-*SCXGXATSDLXVDFXDARQ 543
           TLS+  ++ G    +  PGSG+G   G ++ RG        SC         V       
Sbjct: 78  TLSQARKRPGGSQTLATPGSGSGSG-GAQVARGGACFKCGDSCHWARECPQSVPATGGGG 136

Query: 542 GGGAYGKTPATRPFYG 495
           GGGA+G +      YG
Sbjct: 137 GGGAFGGSGGGGGGYG 152


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +3

Query: 345 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGIT--XERTCEXKASKRPGTV 500
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,773,049
Number of Sequences: 37544
Number of extensions: 418752
Number of successful extensions: 1125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)