Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_E10
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.70 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   1.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.8  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   4.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   8.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +2

Query: 704 PXXXPPPPXPXXPPPXPPXXXPPPXDP 784
           P    PP     PPP  P   PP  +P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = +2

Query: 704 PXXXPPPPXPXXPPPXPPXXXPPPXDPP 787
           P     P  P    P  P   PPP  PP
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPP 52


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect(2) = 1.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 754  PPXXPPPPGS 783
            PP  PPPP S
Sbjct: 1355 PPPPPPPPSS 1364



 Score = 20.6 bits (41), Expect(2) = 1.3
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +1

Query: 676  Y*TLTXXTYSXHXPPPPXXP 735
            Y TL    +    PPPP  P
Sbjct: 1342 YSTLERTAWRQQQPPPPPPP 1361


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
 Frame = +2

Query: 110 QVRSSLRLHRSGPRSDGATRRSRLLQGHRTPHQGSSIRL----YNNSLTRSPSQRTHRTS 277
           ++  +LR+HR G  +  A    R         Q     L    +NN LTR PS R ++  
Sbjct: 253 ELELTLRIHRGGGTNTDARHLFRTASSTPEDLQDLEEPLTTIQHNNCLTRIPSTRINKQH 312

Query: 278 AR 283
            R
Sbjct: 313 TR 314


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 41  TPLCCSPVRISSALSLSTVHHGRQVRSSLRLH 136
           T L CS  R    LS+S +  GR +  S R+H
Sbjct: 628 TTLTCSVTRGDLPLSISWLKDGRAMGPSERVH 659


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 722 PPXPXXPPPXPPXXXP 769
           PP P  PPP P    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 716 PPPPXPXXPPP 748
           PP P P  PPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 744 PPXPPXXPPPP 776
           PP P   PPPP
Sbjct: 338 PPKPAPPPPPP 348


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 273 LQQGLEGRLRVRAATAQRLRQESPXQRSETXTAXPRR 383
           L+QG++  L +  A     R  SP + +E+    P R
Sbjct: 357 LKQGIQFHLYINTAPCGDARIFSPHEENESVDKHPNR 393


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 161 HHRSLGQSDAGEENYELGGHDVL 93
           HH+    + AG +   L GH VL
Sbjct: 920 HHQIQVSTSAGLQTIRLSGHSVL 942


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 559 LMRNWRPXSTPPYDD 603
           LM    P STP YDD
Sbjct: 362 LMMRRTPYSTPEYDD 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,255
Number of Sequences: 438
Number of extensions: 6459
Number of successful extensions: 59
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)