Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_E08
(836 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 273 2e-74
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 272 5e-74
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 271 7e-74
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 27 2.5
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 27 2.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 4.4
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 26 5.8
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 273 bits (669), Expect = 2e-74
Identities = 122/157 (77%), Positives = 135/157 (85%)
Frame = +3
Query: 75 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 254
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 255 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 434
V I+ QRLIKVDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAK
Sbjct: 61 VKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAK 120
Query: 435 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVN 545
YKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVN
Sbjct: 121 YKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVN 157
Score = 96.3 bits (229), Expect = 5e-21
Identities = 45/85 (52%), Positives = 61/85 (71%)
Frame = +1
Query: 532 LSKSTDSIQLDIATTKIMDFIKFESGNLCMITGRRNLGRVGTIVSRERHPGSFDIVHIKD 711
L K D+I+L++ T KI FIKF++ M+TG RN+GRVGTIV RE H GSF+I+H+KD
Sbjct: 153 LIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKD 212
Query: 712 STGHTFATXLNNVFIIXXGTKAYIS 786
+ FAT L+NVF+I K++IS
Sbjct: 213 ALDREFATRLSNVFVIGETGKSWIS 237
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 272 bits (666), Expect = 5e-74
Identities = 121/157 (77%), Positives = 135/157 (85%)
Frame = +3
Query: 75 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 254
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 255 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 434
V I+ QRLIKVDGKVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAK
Sbjct: 61 VKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAK 120
Query: 435 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVN 545
YKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVN
Sbjct: 121 YKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVN 157
Score = 96.3 bits (229), Expect = 5e-21
Identities = 45/85 (52%), Positives = 61/85 (71%)
Frame = +1
Query: 532 LSKSTDSIQLDIATTKIMDFIKFESGNLCMITGRRNLGRVGTIVSRERHPGSFDIVHIKD 711
L K D+I+L++ T KI FIKF++ M+TG RN+GRVGTIV RE H GSF+I+H+KD
Sbjct: 153 LIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKD 212
Query: 712 STGHTFATXLNNVFIIXXGTKAYIS 786
+ FAT L+NVF+I K++IS
Sbjct: 213 ALDREFATRLSNVFVIGETGKSWIS 237
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 271 bits (665), Expect = 7e-74
Identities = 121/157 (77%), Positives = 135/157 (85%)
Frame = +3
Query: 75 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 254
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 255 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 434
V I+ QRLI+VDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAK
Sbjct: 61 VKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAK 120
Query: 435 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVN 545
YKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVN
Sbjct: 121 YKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVN 157
Score = 97.1 bits (231), Expect = 3e-21
Identities = 45/85 (52%), Positives = 61/85 (71%)
Frame = +1
Query: 532 LSKSTDSIQLDIATTKIMDFIKFESGNLCMITGRRNLGRVGTIVSRERHPGSFDIVHIKD 711
L K D+I+L++ T KI FIKF++ M+TG RN+GRVGTIV RE H GSF+I+H+KD
Sbjct: 153 LIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKD 212
Query: 712 STGHTFATXLNNVFIIXXGTKAYIS 786
+ FAT L+NVF+I K++IS
Sbjct: 213 ALDREFATRLSNVFVIGEAGKSWIS 237
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 27.5 bits (58), Expect = 2.5
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -1
Query: 329 SSRISRVSPNFPIN--LYEALFH-NFQDFVSGQSILQTIPQENHQGQALAQLVGT 174
SS+ + P+ P++ +E F NFQ S L IP++ G ++A+++GT
Sbjct: 27 SSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 27.5 bits (58), Expect = 2.5
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +3
Query: 270 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 449
K++ K+ +R + +P + +I + F + G + +I K LC
Sbjct: 13 KRKFDKLRNVIRFEMPFPVWCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCS 72
Query: 450 VK-RVATGPKNVPYLVTHDGR 509
V T PKN Y+V GR
Sbjct: 73 NPIDVHTDPKNTEYIVASGGR 93
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 336 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 512
+V S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 513 IR 518
++
Sbjct: 1778 LK 1779
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 595 KFESGNLCMITGRRNLGRVGTIVSRERHPGSFDIV 699
KFE LC + G L R+G + E GS D+V
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,324,048
Number of Sequences: 5004
Number of extensions: 70451
Number of successful extensions: 198
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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