Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_E08
         (836 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   229   2e-60
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    30   1.8  
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z81521-5|CAE17802.1|  657|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  229 bits (559), Expect = 2e-60
 Identities = 106/155 (68%), Positives = 122/155 (78%)
 Frame = +3

Query: 81  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 260
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 261 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 440
           KI+ QR+++VDGKVRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +K
Sbjct: 62  KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121

Query: 441 LCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVN 545
           LCKVK V T  K VP L T DGRTIRYPDP +KVN
Sbjct: 122 LCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVN 156



 Score =  104 bits (249), Expect = 9e-23
 Identities = 48/83 (57%), Positives = 61/83 (73%)
 Frame = +1

Query: 538 KSTDSIQLDIATTKIMDFIKFESGNLCMITGRRNLGRVGTIVSRERHPGSFDIVHIKDST 717
           K  D+I  +I+T KI D +KFE GNL  +TG RN+GRVG I  RER PG+ DI+HIKDS 
Sbjct: 154 KVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSA 213

Query: 718 GHTFATXLNNVFIIXXGTKAYIS 786
           GH+FAT ++NVF+I  G KA +S
Sbjct: 214 GHSFATRISNVFVIGKGNKALVS 236


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = +3

Query: 693 HCAHQGLHGTHLRHXVEQR-VHNXXGHEGVH 782
           H AH   HG H RH  E    H+   H G H
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH 422



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = +3

Query: 654 HHRVPRETSRLLRHCAHQGLHGTHLRHXVEQRVHNXXGHEGVH 782
           HHR   E        AH G HGTH  H  E   H+   H G H
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHH 442



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/46 (34%), Positives = 16/46 (34%)
 Frame = +3

Query: 645 ACGHHRVPRETSRLLRHCAHQGLHGTHLRHXVEQRVHNXXGHEGVH 782
           A  HH    E      H  H G HGTH  H          GH G H
Sbjct: 464 APAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEH 509



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/43 (37%), Positives = 17/43 (39%)
 Frame = +3

Query: 654 HHRVPRETSRLLRHCAHQGLHGTHLRHXVEQRVHNXXGHEGVH 782
           HH    E      H  H G HGTH  H  E   H+   H G H
Sbjct: 502 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGEH--HHAPAHHGHH 542



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +3

Query: 654 HHRVPRETSRLLRHCAHQGLHGTHLRHXVEQRVHNXXGHEGVH 782
           HH    E      H  H G HGTH  H          GH G H
Sbjct: 525 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEH 567



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
 Frame = +3

Query: 642 GACGHHRVPRETSRLLRHCAHQGLHGTH--LRHXVEQRVHNXXGHE-GVH 782
           G+ G H     T   L H  H G HGTH    H      H+   HE G H
Sbjct: 649 GSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAH 698



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/44 (29%), Positives = 16/44 (36%)
 Frame = +3

Query: 651 GHHRVPRETSRLLRHCAHQGLHGTHLRHXVEQRVHNXXGHEGVH 782
           G H  P        H  H   HG H  H  ++  H+  GH   H
Sbjct: 678 GAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGHHSKH 721



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/44 (31%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
 Frame = +3

Query: 654 HHRVPRETSRLLRHCAHQGLHGTHLRHXVEQRVHNXXG-HEGVH 782
           HH  P        H  H G HG H         H   G H G H
Sbjct: 509 HHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHH 552



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/76 (26%), Positives = 25/76 (32%)
 Frame = +3

Query: 555 PVRHRNYEDYGLHQV*VWELVYDHXTP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLRH 734
           P  H ++ ++G H     E  + H     G  G H             AH G HG H   
Sbjct: 513 PAHHGHHGEHGTHHGHHGE--HHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHA 570

Query: 735 XVEQRVHNXXGHEGVH 782
                 H   G  GVH
Sbjct: 571 PAHHGHHGHHGSHGVH 586


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +3

Query: 393 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 524
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>Z81521-5|CAE17802.1|  657|Caenorhabditis elegans Hypothetical
           protein F32A11.7 protein.
          Length = 657

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = +3

Query: 405 IHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNRFHPVRHRNYEDY 584
           + R+  +  +Y+  K   +  GP+  P   T +  T +YP    K+  F  +  + Y D 
Sbjct: 350 MERVERKIGEYRRLKDDAMGRGPEGQPLYFTKENVTEKYPHEARKIEMFESL-DKTYTDE 408

Query: 585 GLHQV 599
            L ++
Sbjct: 409 QLKEM 413


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,788,718
Number of Sequences: 27780
Number of extensions: 409602
Number of successful extensions: 1171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)