Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_E07
         (865 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465...    93   3e-19
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086...    49   6e-06
12_02_0172 - 14891923-14892102,14892894-14892980                       29   3.6  
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962...    29   4.8  

>02_03_0340 +
           17946133-17946136,17946207-17946342,17946428-17946584,
           17947330-17947458
          Length = 141

 Score = 93.1 bits (221), Expect = 3e-19
 Identities = 58/141 (41%), Positives = 75/141 (53%), Gaps = 18/141 (12%)
 Frame = +2

Query: 98  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 277
           M ++K  ELR K+               + LRVAKVTGG  +KLSKI+VVR +IARV  V
Sbjct: 1   MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60

Query: 278 YHQKMKVNLRNHYKNKKYKPLXLRAKKTRAMRKALTKH------------------EAKI 403
             QK +  LR  YK K   PL LR KKTRA+R+ LTKH                  +  +
Sbjct: 61  ISQKQRAALREAYKKKSLLPLDLRPKKTRAIRRRLTKHQLCYTCIRLLTFSMVAISQLSL 120

Query: 404 XTRKEIRKKSLFPPRVYAVKA 466
            T +E +++  FP R YA+KA
Sbjct: 121 KTEREKKREKYFPMRKYAIKA 141


>06_03_1515 -
           30707600-30707613,30708093-30708167,30708596-30708647,
           30708751-30708831,30709145-30709219,30709870-30709977,
           30710026-30710032,30710133-30710268,30710361-30710685
          Length = 290

 Score = 48.8 bits (111), Expect = 6e-06
 Identities = 36/104 (34%), Positives = 49/104 (47%)
 Frame = +2

Query: 92  VKMGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVY 271
           V M ++K   LR ++               + LRVA+VTGG  +KLS I+ VR A+   Y
Sbjct: 106 VAMARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIK-VRTALREAY 164

Query: 272 IVYHQKMKVNLRNHYKNKKYKPLXLRAKKTRAMRKALTKHEAKI 403
                          K K   PL LR KKT A+R+ LTKH+  +
Sbjct: 165 -------------KKKKKSLLPLDLRPKKTCAIRRRLTKHQGML 195


>12_02_0172 - 14891923-14892102,14892894-14892980
          Length = 88

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +2

Query: 194 VAKVTGGVASKLSKIRVVRKAIARVY--IVYHQKMKVNLRNHYKNKKYKPLXLRAKKTRA 367
           +A +  GV  K+S       A  R    +V H+ +++  RNH  ++KY+   L     R+
Sbjct: 1   MANLQVGVTRKISDPNTKAVATDRTIRNLVCHEDLRLTCRNHLSHQKYRSSLLGETPGRS 60

Query: 368 MRKALTK 388
            R+A TK
Sbjct: 61  -RRAKTK 66


>04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,
            9625520-9626032,9626801-9629153
          Length = 1342

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +2

Query: 305  RNHYKN--KKYKPLXLRAKKTRAMRKALTKHEAKIXTRKEIRKKSLFPPRVYAVK 463
            RNH  N  K   PL  + +K   M+K++     +  T  E  K  +FPP  Y  K
Sbjct: 1048 RNHINNLAKLAGPLYAKLRKN-GMKKSMNYSGVEFFTFGEDNKLKVFPPNTYKFK 1101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,810,980
Number of Sequences: 37544
Number of extensions: 178912
Number of successful extensions: 350
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)