Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_E06
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    48   1e-06
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    42   1e-04
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    25   9.2  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 24/38 (63%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
 Frame = +3

Query: 141 EIKDIKDFLIKARRKDAKSVKIKKNP-ENVKFKVRCSR 251
           +I DIK FL  ARRKDA S +IKKN  ++VKFK+RCS+
Sbjct: 4   QISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSK 41


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +3

Query: 141 EIKDIKDFLIKARRKDAKSVKIKKNPEN-VKFKVRCSR 251
           ++ DIK FL  A R DA S ++KKN    VKFK+RCSR
Sbjct: 4   QVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSR 41


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 215 VLLYFDRFGVFPPRLN*KVFDIFDFSA 135
           VLLY  RF V  P+L   +F  FD  A
Sbjct: 98  VLLYGPRFSVLSPKLYGGIFITFDIIA 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,082,112
Number of Sequences: 5004
Number of extensions: 35151
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)