Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_E06
(776 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81463-5|CAB03853.1| 70|Caenorhabditis elegans Hypothetical pr... 69 4e-12
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 3.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 3.7
AF025469-4|AAG00032.1| 270|Caenorhabditis elegans Hypothetical ... 28 6.5
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 6.5
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 6.5
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 6.5
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 28 8.6
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 8.6
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 8.6
U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astaci... 28 8.6
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 8.6
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 8.6
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 8.6
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 8.6
>Z81463-5|CAB03853.1| 70|Caenorhabditis elegans Hypothetical
protein C06B8.8 protein.
Length = 70
Score = 68.9 bits (161), Expect = 4e-12
Identities = 35/53 (66%), Positives = 41/53 (77%)
Frame = +3
Query: 141 EIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRVPVHPGSSLTKEKAEK 299
EIK+IKDFL+KARRKDAKSVKIKKN N KFKVRC+ ++ K+KAEK
Sbjct: 4 EIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASY-LYTLVVADKDKAEK 55
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -3
Query: 540 GGXXPPKXXFXXGGPKXPPKXGXXPP 463
GG PP F G P PP G PP
Sbjct: 81 GGIPPPPPMFAGGIPPPPPMMGGIPP 106
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/55 (30%), Positives = 18/55 (32%)
Frame = +3
Query: 501 PPXKXXLWGXGXPPPKXXXXXXPXFXXKNRXXPPPXFFXPPXXXXXXTXXPPPXP 665
PP +W PPP P PPP F PP PPP P
Sbjct: 289 PPPSSGMWPPPPPPPPGRTPGPPGMPGM-PPPPPPSRFGPPGMGG---MPPPPPP 339
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/55 (30%), Positives = 18/55 (32%)
Frame = +3
Query: 501 PPXKXXLWGXGXPPPKXXXXXXPXFXXKNRXXPPPXFFXPPXXXXXXTXXPPPXP 665
PP +W PPP P PPP F PP PPP P
Sbjct: 299 PPPSSGMWPPPPPPPPGRTPGPPGMPGM-PPPPPPSRFGPPGMGG---MPPPPPP 349
>AF025469-4|AAG00032.1| 270|Caenorhabditis elegans Hypothetical
protein W09B6.5 protein.
Length = 270
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 57 TFDRYFCCFFWTPLTVLVE 113
TF RY+CCFF T V +E
Sbjct: 184 TFYRYWCCFFCTLFRVKIE 202
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = +3
Query: 531 GXPPPKXXXXXXPXFXXKNRXXPPPXFFXPPXXXXXXTXXPPPXP 665
G PPP P PPP PP T PPP P
Sbjct: 235 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPP---PPRTGSPPPPP 276
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = +3
Query: 531 GXPPPKXXXXXXPXFXXKNRXXPPPXFFXPPXXXXXXTXXPPPXP 665
G PPP P PPP PP T PPP P
Sbjct: 256 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPP---PPRTGSPPPPP 297
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = +3
Query: 531 GXPPPKXXXXXXPXFXXKNRXXPPPXFFXPPXXXXXXTXXPPPXP 665
G PPP P PPP PP T PPP P
Sbjct: 241 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPP---PPRTGSPPPPP 282
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -3
Query: 660 GGGXXXCXXPXXXGGGKXRXGGAXGFXXKXEXXXXXXFXGGGXXPPKXXF 511
GGG C GGG GG+ GF + GG PP F
Sbjct: 118 GGGGGGCGGGGGGGGGGYASGGSGGFASAPVSLPAPSY--GGPPPPAPSF 165
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/66 (28%), Positives = 21/66 (31%), Gaps = 4/66 (6%)
Frame = +2
Query: 476 PLXGGXLGPPXXKXXLGGWXPPPXKXXXXKXSFFXKKP----XAPPXLXFPPPXXXGXXH 643
P+ GG PP GG PPP + P PP PPP
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767
Query: 644 XXXPPP 661
PPP
Sbjct: 768 CPPPPP 773
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -3
Query: 543 GGGXXPPKXXFXXGGPKXPPKXGXXPP 463
GG PP GGP PP G PP
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPP 737
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/66 (28%), Positives = 21/66 (31%), Gaps = 4/66 (6%)
Frame = +2
Query: 476 PLXGGXLGPPXXKXXLGGWXPPPXKXXXXKXSFFXKKP----XAPPXLXFPPPXXXGXXH 643
P+ GG PP GG PPP + P PP PPP
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767
Query: 644 XXXPPP 661
PPP
Sbjct: 768 CPPPPP 773
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -3
Query: 543 GGGXXPPKXXFXXGGPKXPPKXGXXPP 463
GG PP GGP PP G PP
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPP 737
>U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astacin
protease protein33 protein.
Length = 644
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/58 (31%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Frame = +3
Query: 495 WGPPXKXXLWGXGXPPPKXXXXXXPXFXXKNRXX-PPPXFFXPPXXXXXXTXXPPPXP 665
W P WG PPP P F PPP + PP PPP P
Sbjct: 29 WFFPGPLRPWGP--PPPWHRNRGPPPFGPPPPWDRPPPPWRRPPWHRRPPWGLPPPPP 84
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +3
Query: 123 SSTCRAEIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRVPVHPGSSLTKEKAE 296
++T +A + +K L + ++KDA++ I+K E K S++ V S K+K E
Sbjct: 9909 AATKKAAAEKLK--LEEQKKKDAETASIEKQKEQEKLAQEQSKLEVDAKKSAEKQKLE 9964
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +3
Query: 123 SSTCRAEIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRVPVHPGSSLTKEKAE 296
++T +A + +K L + ++KDA++ I+K E K S++ V S K+K E
Sbjct: 9929 AATKKAAAEKLK--LEEQKKKDAETASIEKQKEQEKLAQEQSKLEVDAKKSAEKQKLE 9984
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +3
Query: 123 SSTCRAEIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRVPVHPGSSLTKEKAE 296
++T +A + +K L + ++KDA++ I+K E K S++ V S K+K E
Sbjct: 9929 AATKKAAAEKLK--LEEQKKKDAETASIEKQKEQEKLAQEQSKLEVDAKKSAEKQKLE 9984
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/66 (28%), Positives = 21/66 (31%), Gaps = 4/66 (6%)
Frame = +2
Query: 476 PLXGGXLGPPXXKXXLGGWXPPPXKXXXXKXSFFXKKP----XAPPXLXFPPPXXXGXXH 643
P+ GG PP GG PPP + P PP PPP
Sbjct: 291 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 350
Query: 644 XXXPPP 661
PPP
Sbjct: 351 CPPPPP 356
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -3
Query: 543 GGGXXPPKXXFXXGGPKXPPKXGXXPP 463
GG PP GGP PP G PP
Sbjct: 294 GGPPPPPGLPPITGGPPPPPPPGGLPP 320
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,213,667
Number of Sequences: 27780
Number of extensions: 306658
Number of successful extensions: 947
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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