Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_E05
(912 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 29 6.1
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 29 6.1
U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical pr... 29 6.1
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 29 6.1
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 29 6.1
AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical ... 29 6.1
AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical ... 29 6.1
AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical ... 29 6.1
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 28.7 bits (61), Expect = 6.1
Identities = 24/76 (31%), Positives = 29/76 (38%)
Frame = +3
Query: 624 PLETXLXPPXCSEPXPLTRIPVRPFXPSGKRWRLSHYLTPGRYLXSGVRSXPSQPGAVVX 803
PL P S P P+ R P P P G++ + PG G+R P PG
Sbjct: 750 PLPMSDYRPHPSGPSPVPR-PA-PAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGG 807
Query: 804 QTPPFNPXPXXPYPGN 851
PP P P P N
Sbjct: 808 MYPPLIP-TRVPTPSN 822
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 28.7 bits (61), Expect = 6.1
Identities = 24/75 (32%), Positives = 29/75 (38%)
Frame = +3
Query: 624 PLETXLXPPXCSEPXPLTRIPVRPFXPSGKRWRLSHYLTPGRYLXSGVRSXPSQPGAVVX 803
PL P S P P+ R P P P G++ + PG G+R P PG
Sbjct: 750 PLPMSDYRPHPSGPSPVPR-PA-PAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGG 807
Query: 804 QTPPFNPXPXXPYPG 848
PP P P PG
Sbjct: 808 MYPPL--IPTRPGPG 820
>U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical
protein F56D3.1 protein.
Length = 441
Score = 28.7 bits (61), Expect = 6.1
Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 6/93 (6%)
Frame = +3
Query: 585 AKTXRTIKIPGVFPLETXLXPPXCSEPXPLTRIPVRPFXPSGKRWRLSHYL------TPG 746
A T RTI P PP + +TR P++PF P ++ P
Sbjct: 125 ATTIRTIPFVQTTPATFATLPPAPA----VTRAPIQPFVPQTVATIAPSFVRPQVPTAPP 180
Query: 747 RYLXSGVRSXPSQPGAVVXQTPPFNPXPXXPYP 845
R + P +P + PF P P P P
Sbjct: 181 RVIAPQQPQQPFRPIQPIQPQQPFQPRPFQPRP 213
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 28.7 bits (61), Expect = 6.1
Identities = 24/75 (32%), Positives = 29/75 (38%)
Frame = +3
Query: 624 PLETXLXPPXCSEPXPLTRIPVRPFXPSGKRWRLSHYLTPGRYLXSGVRSXPSQPGAVVX 803
PL P S P P+ R P P P G++ + PG G+R P PG
Sbjct: 750 PLPMSDYRPHPSGPSPVPR-PA-PAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGG 807
Query: 804 QTPPFNPXPXXPYPG 848
PP P P PG
Sbjct: 808 MYPPL--IPTRPGPG 820
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 28.7 bits (61), Expect = 6.1
Identities = 24/76 (31%), Positives = 29/76 (38%)
Frame = +3
Query: 624 PLETXLXPPXCSEPXPLTRIPVRPFXPSGKRWRLSHYLTPGRYLXSGVRSXPSQPGAVVX 803
PL P S P P+ R P P P G++ + PG G+R P PG
Sbjct: 750 PLPMSDYRPHPSGPSPVPR-PA-PAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGG 807
Query: 804 QTPPFNPXPXXPYPGN 851
PP P P P N
Sbjct: 808 MYPPLIP-TRVPTPSN 822
>AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical
protein H28G03.2c protein.
Length = 275
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 706 PGNVGAFLITSPLVGISXPVLGRSPPNLGLWFXKPPRSTPXPXXLI 843
P +G P +G+ P LG PP++GL P + P P L+
Sbjct: 84 PPGMGPPPFMPPPIGMPPPPLGMPPPHIGL--GAAPYAVPPPMSLL 127
>AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical
protein H28G03.2b protein.
Length = 298
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 706 PGNVGAFLITSPLVGISXPVLGRSPPNLGLWFXKPPRSTPXPXXLI 843
P +G P +G+ P LG PP++GL P + P P L+
Sbjct: 107 PPGMGPPPFMPPPIGMPPPPLGMPPPHIGL--GAAPYAVPPPMSLL 150
>AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical
protein H28G03.2a protein.
Length = 548
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 706 PGNVGAFLITSPLVGISXPVLGRSPPNLGLWFXKPPRSTPXPXXLI 843
P +G P +G+ P LG PP++GL P + P P L+
Sbjct: 357 PPGMGPPPFMPPPIGMPPPPLGMPPPHIGL--GAAPYAVPPPMSLL 400
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,813,896
Number of Sequences: 27780
Number of extensions: 400646
Number of successful extensions: 925
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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