Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_E04
         (937 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1715 + 28950718-28950876,28950969-28951091,28951121-289515...    29   5.3  

>07_03_1715 +
           28950718-28950876,28950969-28951091,28951121-28951594,
           28951673-28951795,28951886-28952131
          Length = 374

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 689 C*GDHQSWRIXAWSPXVWSFVXG 621
           C GD+QSW+I  W P   S   G
Sbjct: 184 CKGDNQSWKILPWGPEAHSSSPG 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,317,142
Number of Sequences: 37544
Number of extensions: 421357
Number of successful extensions: 730
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)