Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_E03
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    29   0.87 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   1.2  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    27   2.7  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    27   3.5  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.1  
SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces ...    26   8.1  

>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 110 FNVGLNDGARLSSRGAPPPRVVATLTSSIPNRSHRGPGAVPFHQAQR 250
           + + L   A LSS+ +  P++ + L +S   RS R   A PF   QR
Sbjct: 162 WEIELAQPAALSSQSSLSPKLSSVLPTSTQKRSVRSNNAKPFESYQR 208


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/46 (34%), Positives = 18/46 (39%)
 Frame = +1

Query: 133 SSSIKQGCSAPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGT 270
           S+S     S PP G  T        P  T   + PP   ST S GT
Sbjct: 282 STSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGT 327



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/46 (34%), Positives = 18/46 (39%)
 Frame = +1

Query: 133 SSSIKQGCSAPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGT 270
           S+S     S PP G  T        P  T   + PP   ST S GT
Sbjct: 336 STSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGT 381


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -3

Query: 474 PGGNPDALGGFRPWAAPGPARTG 406
           PGG P A  G  P AAPG A  G
Sbjct: 615 PGGMPGAAPGAAPGAAPGAAPGG 637


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
 Frame = -3

Query: 495 QAPRRTXPG-GNPDALG--GFRPWAAPGPARTGLSALERALLQQVPPAGSVAPGLSLGVD 325
           QAP    PG G P       F P   P P  T +SA     LQ +PP   V PG    ++
Sbjct: 194 QAPYNVRPGYGMPSNQKPPNFAP-GMPAPGPTAVSASPS--LQSMPPTNGVIPGAQPSIE 250


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 164 PRVVATLTSSIPNRSHRGPGAVPFHQAQRALSATGQGDEPKA 289
           P+ +A  TS+IPN    GP   P  Q  +  S +     P+A
Sbjct: 18  PKSLAGSTSNIPNELFVGPDGRPLSQNAQGASKSSSKVVPQA 59


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 18/59 (30%), Positives = 23/59 (38%)
 Frame = +2

Query: 155  APPPRVVATLTSSIPNRSHRGPGAVPFHQAQRALSATGQGDEPKATXGHFR*RPTGQST 331
            APPP + A+   S+PN   R       H   R L  T   D+ K   G       G S+
Sbjct: 1730 APPPPLPASSAPSVPNPGDRSALLQQIHTGTR-LKKTVTTDKSKPIAGRVLDASDGNSS 1787


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
 Frame = +2

Query: 197 PNRSHRGPGAVPFHQAQRALSATGQGDEPKATX-GHFR*RPTGQSTPKESPGATDPAGGT 373
           P  S R  G  P        S       P++   G     P G+S P   P  + P+ G 
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGR 374

Query: 374 -----CCSRARSKADSPVRAGPGAAQGRKPP 451
                  SRA S   +P  A PG +    PP
Sbjct: 375 QPPPLSSSRAVSNPPAPPPAIPGRSAPALPP 405


>SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 389 RSKADSPVRAGPGAAQGRKPPSASGFPP 472
           R   DS +R      QGR P S+S FPP
Sbjct: 98  RKIQDSLIRQRTTMRQGRFPSSSSEFPP 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,407,589
Number of Sequences: 5004
Number of extensions: 69518
Number of successful extensions: 185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)