Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_E03
(878 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 36 0.038
AF025460-2|AAF02169.3| 545|Caenorhabditis elegans Prion-like-(q... 33 0.36
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 32 0.62
Z67738-4|CAJ43444.1| 279|Caenorhabditis elegans Hypothetical pr... 31 0.82
Z67738-3|CAA91544.2| 332|Caenorhabditis elegans Hypothetical pr... 31 0.82
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 31 1.1
Z81038-14|CAI79153.1| 696|Caenorhabditis elegans Hypothetical p... 31 1.4
Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical p... 31 1.4
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical pr... 30 1.9
M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein. 30 1.9
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 30 2.5
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 30 2.5
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr... 30 2.5
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr... 30 2.5
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 30 2.5
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 30 2.5
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 30 2.5
AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical... 30 2.5
Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 29 3.3
U00066-9|AAA50743.3| 780|Caenorhabditis elegans Mediator protei... 29 3.3
U00066-8|AAM54164.1| 777|Caenorhabditis elegans Mediator protei... 29 3.3
Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 29 4.4
U64609-1|AAB04598.1| 405|Caenorhabditis elegans Sperm-specific ... 29 4.4
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 29 4.4
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 29 4.4
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 29 4.4
M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein. 29 5.8
AF106583-7|AAD03130.1| 299|Caenorhabditis elegans Hypothetical ... 29 5.8
U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protei... 28 7.7
AF101319-5|AAC69356.2| 530|Caenorhabditis elegans Hypothetical ... 28 7.7
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein
91 protein.
Length = 278
Score = 35.9 bits (79), Expect = 0.038
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = +2
Query: 314 PTGQSTPKESPGATDPAGGTCCSRARSKADSPVRAGP-GAAQGRKPPSASGFPPGXVLLG 490
P G++ P +PGA PAG A + +P AGP G A P A G P G
Sbjct: 135 PAGEAGPAGAPGAPGPAGPDGQPGADGQGGAPGPAGPEGPAGDAGAPGAPGAPGNDGQPG 194
Query: 491 ACG*TETATVG 523
G T T G
Sbjct: 195 QNGQRSTGTPG 205
>AF025460-2|AAF02169.3| 545|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 41
protein.
Length = 545
Score = 32.7 bits (71), Expect = 0.36
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 6/109 (5%)
Frame = +2
Query: 152 GAPPPRVVATLTSSIPNRSHRGPGAVPFHQAQRALSA------TGQGDEPKATXGHFR*R 313
GA ++ TS+ + SH + P HQ A SA + P A+
Sbjct: 47 GATSSSAASSSTSTPSSSSHHKKSSPPHHQKSAAPSAPPRDVTSAHAPPPPASSAPIVGA 106
Query: 314 PTGQSTPKESPGATDPAGGTCCSRARSKADSPVRAGPGAAQGRKPPSAS 460
P +TP+ +P AT PA + ++ + PV P AA ++P S +
Sbjct: 107 PRQGATPQAAP-ATTPATTSQHQQSIATPKPPVVRPPSAATQQQPVSVT 154
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 31.9 bits (69), Expect = 0.62
Identities = 28/88 (31%), Positives = 30/88 (34%), Gaps = 3/88 (3%)
Frame = +2
Query: 215 GPGAVPFHQAQRALSATGQGDEP--KATXGHFR*RPTGQSTPKESPGATDPAGGTCCSRA 388
GPG A GQ P G R G P +PG PAGG
Sbjct: 162 GPGPAGPQGPAGDAGAPGQAGAPGHPGAPGQGGQRSRGTPGPAGAPGPQGPAGGPGQPGQ 221
Query: 389 RSKADSPVRAG-PGAAQGRKPPSASGFP 469
A +P AG PGA G P G P
Sbjct: 222 SGGAGAPGPAGAPGAPGGPGQPGQDGQP 249
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +2
Query: 314 PTGQSTPKESPGATDPAGGTCCSRARSKADSPVRAGP-GAAQGRKPPSASGFP 469
P G P +PGA P G + + + P AGP G A P +G P
Sbjct: 132 PAGAPGPAGAPGAPGPQGPSGAPGQDAVGEGPGPAGPQGPAGDAGAPGQAGAP 184
>Z67738-4|CAJ43444.1| 279|Caenorhabditis elegans Hypothetical
protein W03G11.1b protein.
Length = 279
Score = 31.5 bits (68), Expect = 0.82
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +2
Query: 320 GQSTPKESPGATDPAGGTCCSRARSKADSPV-RAGPGAAQGRK-PPSASGFP 469
G P +PGA PAG + A SP G AQG K PP A+G P
Sbjct: 174 GPRGPSGNPGADGPAGQLGPQGGSNVAPSPAGEPGAPGAQGPKGPPGAAGRP 225
>Z67738-3|CAA91544.2| 332|Caenorhabditis elegans Hypothetical
protein W03G11.1a protein.
Length = 332
Score = 31.5 bits (68), Expect = 0.82
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +2
Query: 320 GQSTPKESPGATDPAGGTCCSRARSKADSPV-RAGPGAAQGRK-PPSASGFP 469
G P +PGA PAG + A SP G AQG K PP A+G P
Sbjct: 227 GPRGPSGNPGADGPAGQLGPQGGSNVAPSPAGEPGAPGAQGPKGPPGAAGRP 278
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 320 GQSTPKESPGATDPAGGTCCSRARSKADSPVRAG-PGAAQGRKPPSASG 463
GQ P +PGA +GG+ A SP R+G PG+ P A G
Sbjct: 220 GQKGPSGAPGAPGQSGGSALPGPPGPAGSPGRSGQPGSNGNVGAPGAPG 268
>Z81038-14|CAI79153.1| 696|Caenorhabditis elegans Hypothetical
protein C25A1.10b protein.
Length = 696
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = +2
Query: 218 PGAVPFHQAQRALSATGQGDEPKATXGHFR*RPTGQSTPKESPGATDPAGGTCCSRARSK 397
P VP + + S DE K T +PT ++TPK+S D + + A +K
Sbjct: 451 PNVVPKKEKAASSSDDSSDDEKKPTA-----KPTPKATPKQSAKKADSSDDSSDDEAPAK 505
Query: 398 ADSPVRAGPGAAQGRKPPSAS 460
+P ++ P +K S+S
Sbjct: 506 -KTPAKSTPAKTAVKKEASSS 525
>Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical
protein C25A1.10a protein.
Length = 971
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = +2
Query: 218 PGAVPFHQAQRALSATGQGDEPKATXGHFR*RPTGQSTPKESPGATDPAGGTCCSRARSK 397
P VP + + S DE K T +PT ++TPK+S D + + A +K
Sbjct: 726 PNVVPKKEKAASSSDDSSDDEKKPTA-----KPTPKATPKQSAKKADSSDDSSDDEAPAK 780
Query: 398 ADSPVRAGPGAAQGRKPPSAS 460
+P ++ P +K S+S
Sbjct: 781 -KTPAKSTPAKTAVKKEASSS 800
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical
protein T11F9.9 protein.
Length = 299
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = +2
Query: 314 PTGQSTPKESPGATDPAGGTCCSRARSKADSPVRAGPGAAQGRKPPSASGFPPG 475
P Q P+ PG P G + + + SP + G A G K PS PG
Sbjct: 143 PPCQPCPQGPPGPPGPPGPSGDAGSNGNPGSPGQDGQPGAPGNKGPSGQNGNPG 196
>Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.4 protein.
Length = 290
Score = 30.3 bits (65), Expect = 1.9
Identities = 30/98 (30%), Positives = 32/98 (32%), Gaps = 3/98 (3%)
Frame = +2
Query: 215 GPGAVPFHQAQRALSATGQGDEP--KATXGHFR*RPTGQSTPKESPGATDPAGGTCCSRA 388
GPG A GQ P G R G P +PG PAGG
Sbjct: 162 GPGPAGPQGPAGDAGAPGQAGAPGHPGAPGQGGQRSRGTPGPSGAPGPQGPAGGPGQPGQ 221
Query: 389 RSKADSPVRAG-PGAAQGRKPPSASGFPPGXVLLGACG 499
A +P AG PGA G G P GA G
Sbjct: 222 SGGAGAPGPAGAPGAPGGPGNAGTPGTPGAPGNAGAPG 259
>M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein.
Length = 282
Score = 30.3 bits (65), Expect = 1.9
Identities = 30/107 (28%), Positives = 38/107 (35%), Gaps = 3/107 (2%)
Frame = +2
Query: 164 PRVVATLTSSIPNRSHRGPGAVPFHQAQRAL--SATGQGDEPKATXGHFR*RPTG-QSTP 334
P V+ +T IP + P P + L A GD+ + H PTG Q P
Sbjct: 121 PGVIVAITHDIPGGCIKCPPGCPGPRGPSGLVGPAGPAGDQGR----HGPPGPTGGQGGP 176
Query: 335 KESPGATDPAGGTCCSRARSKADSPVRAGPGAAQGRKPPSASGFPPG 475
E A P C + + PG A PP G PPG
Sbjct: 177 GEQGDAGRPGAAGCPGPPGPRGEPGTEYRPGQAGRAGPPGPRG-PPG 222
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Frame = +2
Query: 314 PTGQSTPKESPGATDPA---GGTCCSRARS--KADSPVRAGPGAAQGRKPPSASGFPP 472
P ++P G PA GG+ +R RS + SP R P R PP G PP
Sbjct: 186 PRRNASPGGDGGGGSPAARRGGSAGNRRRSPPRRGSPRRGSPRRDTRRSPPRRRGSPP 243
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 344 PGATDPAGGTCCSRARSKADSPVRAGPGAAQGRKPPSASGFP 469
PG PAG + +P GPG A + PP A+G P
Sbjct: 217 PGEPGPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAP 258
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 344 PGATDPAGGTCCSRARSKADSPVRAGPGAAQGRKPPSASGFP 469
PG PAG + +P GPG A + PP A+G P
Sbjct: 217 PGEPGPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAP 258
>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical
protein B0496.3a protein.
Length = 1551
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -1
Query: 800 RAARVTEIFKLSWLNYERIQPIXASXADNTNIDHFK-SQXRETHIVLSIFD 651
R A + +I WLN E P+ +N IDH ++ ET IV + D
Sbjct: 313 RRATIFDIASHWWLNLEENMPVIQELPENQIIDHTPLTEREETMIVQDLAD 363
>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical
protein B0496.3b protein.
Length = 1592
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -1
Query: 800 RAARVTEIFKLSWLNYERIQPIXASXADNTNIDHFK-SQXRETHIVLSIFD 651
R A + +I WLN E P+ +N IDH ++ ET IV + D
Sbjct: 313 RRATIFDIASHWWLNLEENMPVIQELPENQIIDHTPLTEREETMIVQDLAD 363
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 344 PGATDPAGGTCCSRARSKADSPVRAGPGAAQGRKPPSASGFP 469
PG PAG + +P GPG A + PP A+G P
Sbjct: 217 PGEPGPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAP 258
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 344 PGATDPAGGTCCSRARSKADSPVRAGPGAAQGRKPPSASGFP 469
PG PAG + +P GPG A + PP A+G P
Sbjct: 217 PGEPGPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAP 258
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 29.9 bits (64), Expect = 2.5
Identities = 26/102 (25%), Positives = 38/102 (37%)
Frame = +2
Query: 188 SSIPNRSHRGPGAVPFHQAQRALSATGQGDEPKATXGHFR*RPTGQSTPKESPGATDPAG 367
++ P+ + P A P A A A G + A P ++ P E+ A + AG
Sbjct: 323 AAAPDAAAAAPEAAPAEAAPAAEGAGGGAEPAGAAPDAAAAAP--EAAPAEAAPAAEGAG 380
Query: 368 GTCCSRARSKADSPVRAGPGAAQGRKPPSASGFPPGXVLLGA 493
G + D+ A AA P+A G G GA
Sbjct: 381 GGAEPAGAAAPDAAAAAPEAAAAPEAAPAAEGAGGGAEPAGA 422
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Frame = +2
Query: 314 PTGQSTPKESPGATDPAGGTCCSRARSKADSPVRAGPGAAQGRKPPSAS--GFPPGXVLL 487
P G++ PG PAG + +A +P + G A G A+ PP L
Sbjct: 222 PNGEAGAGSGPGPEGPAGPPGPNGKDGEAGAPGKDGDAGADGAPGTDAAYCPCPPRSAAL 281
Query: 488 GACG*TETA 514
GA G E A
Sbjct: 282 GAGGGAEPA 290
>AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical
protein F41E6.11 protein.
Length = 316
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +2
Query: 404 SPVRAGPGAAQGRKPPSASGFPP 472
SPV A PG AQG P A G+ P
Sbjct: 249 SPVAAAPGYAQGYAPAYAQGYAP 271
>Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical
protein F55C10.3 protein.
Length = 266
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/54 (31%), Positives = 21/54 (38%)
Frame = +2
Query: 314 PTGQSTPKESPGATDPAGGTCCSRARSKADSPVRAGPGAAQGRKPPSASGFPPG 475
P Q P+ PG P G + + SP + G A G K PS PG
Sbjct: 110 PPCQPCPQGPPGPPGPPGPSGDAGGNGNPGSPGQDGQPGAPGNKGPSGPNGNPG 163
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/54 (31%), Positives = 21/54 (38%)
Frame = +2
Query: 314 PTGQSTPKESPGATDPAGGTCCSRARSKADSPVRAGPGAAQGRKPPSASGFPPG 475
P Q P+ PG P G + + SP + G A G K PS PG
Sbjct: 143 PPCQPCPQGPPGPPGPPGPSGDAGGNGNPGSPGQDGQPGAPGNKGPSGPNGNPG 196
>U00066-9|AAA50743.3| 780|Caenorhabditis elegans Mediator protein
15, isoform a protein.
Length = 780
Score = 29.5 bits (63), Expect = 3.3
Identities = 29/104 (27%), Positives = 39/104 (37%), Gaps = 1/104 (0%)
Frame = +2
Query: 143 SSRGAPPPRVVATLTSSIPNRSHRGPGAVPFHQAQ-RALSATGQGDEPKATXGHFR*RPT 319
S++ PP VAT +S + PG +P A A A P RP
Sbjct: 119 SAQARNPPVTVATTQASTTPSAPNPPGGLPAPSASATAAVAAAVASFPSPDTSI---RPG 175
Query: 320 GQSTPKESPGATDPAGGTCCSRARSKADSPVRAGPGAAQGRKPP 451
GQ T PG+ P GG + + + G A G+ PP
Sbjct: 176 GQIT----PGSQAPGGGPTPAPNVPFPNGSSQMNGGPAMGQPPP 215
>U00066-8|AAM54164.1| 777|Caenorhabditis elegans Mediator protein
15, isoform b protein.
Length = 777
Score = 29.5 bits (63), Expect = 3.3
Identities = 29/104 (27%), Positives = 39/104 (37%), Gaps = 1/104 (0%)
Frame = +2
Query: 143 SSRGAPPPRVVATLTSSIPNRSHRGPGAVPFHQAQ-RALSATGQGDEPKATXGHFR*RPT 319
S++ PP VAT +S + PG +P A A A P RP
Sbjct: 116 SAQARNPPVTVATTQASTTPSAPNPPGGLPAPSASATAAVAAAVASFPSPDTSI---RPG 172
Query: 320 GQSTPKESPGATDPAGGTCCSRARSKADSPVRAGPGAAQGRKPP 451
GQ T PG+ P GG + + + G A G+ PP
Sbjct: 173 GQIT----PGSQAPGGGPTPAPNVPFPNGSSQMNGGPAMGQPPP 212
>Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical
protein C15A11.1 protein.
Length = 303
Score = 29.1 bits (62), Expect = 4.4
Identities = 29/91 (31%), Positives = 31/91 (34%), Gaps = 3/91 (3%)
Frame = +2
Query: 260 ATGQGDEPKATXGHFR*RPTGQSTPKESPGATDPAGGTCCSRARSKADSPVRAGPGAAQG 439
A G D G+ P G P G P G + A A P AGP G
Sbjct: 95 AAGVADSFLGVEGNCIKCPAGPPGPPGPDGNAGPEGPSGAPGADGDAAGPGEAGPAGPAG 154
Query: 440 RKPPSASGFP--PG-XVLLGACG*TETATVG 523
PP G P PG GA G T T G
Sbjct: 155 --PPGPDGQPGAPGPNGQPGAAGTTSTNEPG 183
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = +2
Query: 314 PTGQSTPKESPGATDPAGGTCCSRARSKADSPVRAGPGAAQGRKPPSASGFP 469
P G+ST E P A PAG + + A PGAA PP +G P
Sbjct: 212 PAGESTYPE-PAAPGPAGPPGPAGPPGPDGASPTAAPGAAGPPGPPGPAGAP 262
>U64609-1|AAB04598.1| 405|Caenorhabditis elegans Sperm-specific
family, class qprotein 2 protein.
Length = 405
Score = 29.1 bits (62), Expect = 4.4
Identities = 31/103 (30%), Positives = 37/103 (35%), Gaps = 8/103 (7%)
Frame = +2
Query: 215 GPGAVPFHQAQRALSATGQGDEPKATXGHFR*--RPTGQSTPKESPGATDPAGGTCCSRA 388
G GA P + A G G A +F P G + S GA PAGG S
Sbjct: 38 GGGAAPPPGTSVYMGAGGGGGGGGAQSAYFAVGGAPVGGAPAAVSIGAPPPAGGGGASTM 97
Query: 389 RSKADSPVRAGPGAAQGRKPPSAS------GFPPGXVLLGACG 499
+ +P A A G P AS G P G + A G
Sbjct: 98 TALGGAPSGASTMTAVGGAPRGASTMTAVGGVPSGASTMTAVG 140
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 341 SPGATDPAGGTCCSRARSKADSPVRAGPGAAQGRK 445
+PG+ P G A K +P +AGP A+G K
Sbjct: 249 TPGSKGPPGNPGAPGADGKPGAPGQAGPAGAKGEK 283
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +2
Query: 326 STPKESPGATDPAGGTCC-SRARSKADSPVRAGPGAAQGRKPPSASG 463
+ P S + +GGT SRA S +D P GP G + SG
Sbjct: 332 NNPDPSTTSALTSGGTSTTSRASSASDDPTTTGPSTTSGSTASTTSG 378
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/59 (33%), Positives = 22/59 (37%)
Frame = +2
Query: 323 QSTPKESPGATDPAGGTCCSRARSKADSPVRAGPGAAQGRKPPSASGFPPGXVLLGACG 499
QS + PG PAG SP G G + R P ASG P GA G
Sbjct: 162 QSGGRGPPGPRGPAGDAGSPGQPGHPGSPGNPGRGGQRSRGTPGASGRPGPQGPAGAPG 220
>M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein.
Length = 283
Score = 28.7 bits (61), Expect = 5.8
Identities = 26/111 (23%), Positives = 37/111 (33%), Gaps = 7/111 (6%)
Frame = +2
Query: 164 PRVVATLTSSIPNRSHRGPGAVPFHQAQRALSAT-------GQGDEPKATXGHFR*RPTG 322
P V+ +T IP + P P + L + G+ P G P G
Sbjct: 121 PGVIVAITHDIPGGCIKCPPGCPGPKGPSGLPGSAGPAGGNGRRGPPGPVGGPGEQGPQG 180
Query: 323 QSTPKESPGATDPAGGTCCSRARSKADSPVRAGPGAAQGRKPPSASGFPPG 475
+ + G PAG K P R GP +G P+ + PG
Sbjct: 181 DAGRPGAAGRPGPAGPRGEPGTEYKPGQPGRPGPQGPRGETGPAGNPGAPG 231
>AF106583-7|AAD03130.1| 299|Caenorhabditis elegans Hypothetical
protein F23C8.4 protein.
Length = 299
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 395 KADSPVRAGPGAAQGRKPPSASGF 466
+ D+P +A PGAA PP A+ F
Sbjct: 44 ETDAPAQAAPGAADSGAPPVAASF 67
>U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protein
19 protein.
Length = 289
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/53 (35%), Positives = 21/53 (39%)
Frame = +2
Query: 311 RPTGQSTPKESPGATDPAGGTCCSRARSKADSPVRAGPGAAQGRKPPSASGFP 469
RP G P PG+ PAGG P GP GR P A+G P
Sbjct: 148 RP-GPKGPSGLPGSAGPAGGNGRRGPPGPVGGPGEQGPQGDAGR--PGAAGRP 197
>AF101319-5|AAC69356.2| 530|Caenorhabditis elegans Hypothetical
protein K08D9.6 protein.
Length = 530
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 567 HIMSQYVSRLSFFLRYAFGLPFXXS-AIVIKDAQNNVCFP 683
HI++ +S L F + Y FG+P S A V+KD+ + P
Sbjct: 34 HILTLIISILFFLILYIFGIPEPSSIAQVVKDSFSPPALP 73
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,906,411
Number of Sequences: 27780
Number of extensions: 460458
Number of successful extensions: 1740
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1713
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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