Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_E02
         (1060 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.6  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   6.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.0  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +2

Query: 932  NXXXGXRRPPPPPKXXXRAPPPPPP 1006
            N   G    PP P     APPPPPP
Sbjct: 329  NIVLGDSDTPPKP-----APPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 989  PPPPPPP 1009
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 989  PPPPPPP 1009
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 13/48 (27%), Positives = 15/48 (31%)
 Frame = +2

Query: 860  PXXXTXPHPPXGRXIFXPPPQXKXNXXXGXRRPPPPPKXXXRAPPPPP 1003
            P     P PP  R    P  +   N      +P PP     R P   P
Sbjct: 103  PVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEP 150


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = +1

Query: 919  PXQXKQXXXXPXPPPPPKXXXXXPPPXPPP 1008
            P Q  Q      PP P +      PP  PP
Sbjct: 27   PHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.151    0.536 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 284,473
Number of Sequences: 438
Number of extensions: 13459
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 35306793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)