Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_E01
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.45 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.2  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   5.6  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    26   7.4  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    25   9.8  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 586  PXXTPPPXXXXPPPPPXKKXXPPPP 660
            P    PP    P PPP     PPPP
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPP 1718



 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = +1

Query: 553  PXQXXXXFXXXPXXTPPPXXXXPPPPPXKKXXPPPP 660
            P Q        P  + PP    PP P      PPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +1

Query: 595  TPPPXXXXPPPPPXKKXXPPPPXXXXP 675
            TPPP     PPPP     P  P    P
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPPSAPP 1732



 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +1

Query: 586  PXXTPPPXXXXPPPPPXKKXXPPPPXXXXP 675
            P  TPP       PP      PPPP    P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVP 1715



 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +1

Query: 598  PPPXXXXPPPPPXKKXXPPPPXXXXP 675
            PPP    PPPP        PP    P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 17/53 (32%), Positives = 17/53 (32%)
 Frame = +1

Query: 502 PPXXXFXTPXGXFFFXPPXQXXXXFXXXPXXTPPPXXXXPPPPPXKKXXPPPP 660
           PP     TP       PP          P   P      PPPPP     PPPP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP-----PPPP 783



 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
 Frame = +1

Query: 586 PXXTPPPXXXXPPPPPXKKXX----PPPPXXXXP 675
           P   P P    PPPPP         PPPP    P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
 Frame = +1

Query: 586 PXXTPPPXXXXPPPP---PXKKXXPPPP 660
           P   PPP    PPPP   P  +  PPPP
Sbjct: 5   PPGNPPPP---PPPPGFEPPSQPPPPPP 29


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 586 PXXTPPPXXXXPPPPPXKKXXPPPP 660
           P  TP P    P P P  K  PPPP
Sbjct: 725 PQVTPAPPT--PAPTPAVKHHPPPP 747


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 601 PPXXXXPPPPPXKKXXPPPP 660
           PP    PPP P +    PPP
Sbjct: 27  PPRTMAPPPAPSRVQQAPPP 46


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/52 (28%), Positives = 17/52 (32%)
 Frame = -3

Query: 655 GGXXXFXXGGGGXXXXXGGGXXXGXXKKXXXFXGGGKKKTXPXGXKXXXXGG 500
           GG   F  G GG     GG    G         GGG +     G +    GG
Sbjct: 138 GGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,113,659
Number of Sequences: 5004
Number of extensions: 36161
Number of successful extensions: 182
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)