Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_D24
         (1088 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   0.27 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   0.83 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.89 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   6.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.2 bits (50), Expect(2) = 0.27
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 711  PPPPPPPQT 737
            PPPPPPP +
Sbjct: 1356 PPPPPPPSS 1364



 Score = 23.8 bits (49), Expect = 2.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 711  PPPPPPP 731
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 1068 PPPPPPP 1088
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 1068 PPPPPPP 1088
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 571  PPPPXPPP 594
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 574  PPPXPPPP 597
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 21.0 bits (42), Expect(2) = 0.27
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 645  PPPPPP 662
            PPPPPP
Sbjct: 1355 PPPPPP 1360


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +1

Query: 544 GXXXXPPXXPPPPXPPPPXXXPPXSRPL 627
           G    PP   PP  PPPP    P S  L
Sbjct: 333 GDSDTPPKPAPP--PPPPSSSGPDSAKL 358



 Score = 22.2 bits (45), Expect(2) = 0.83
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 696 PXXXXPPPPPP 728
           P    PPPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 21.4 bits (43), Expect(2) = 0.83
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 714 PPPPPPQT 737
           PPPPPP +
Sbjct: 343 PPPPPPSS 350


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.89
 Identities = 12/30 (40%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
 Frame = +1

Query: 526 PPXPXXGXXXXPPXXPPPPXPP--PPXXXP 609
           P  P  G    P   PPP  PP  PP   P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.8 bits (49), Expect = 2.7
 Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
 Frame = +1

Query: 559 PPXXPPPPXPPP---PXXXPPXSRPLPSXXTXPPPPPPXXKKKXPTXXFLS 702
           P    P P P P   P      S P PS    P  PP     + P+   +S
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMIS 66



 Score = 23.0 bits (47), Expect = 4.8
 Identities = 10/32 (31%), Positives = 11/32 (34%)
 Frame = +1

Query: 529 PXPXXGXXXXPPXXPPPPXPPPPXXXPPXSRP 624
           P P           PP P   PP   PP + P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 8.3
 Identities = 10/31 (32%), Positives = 10/31 (32%)
 Frame = +3

Query: 570 PPPPPXXPPXXPPPXLXXPPXXXHXPPPPPP 662
           P P P        P    PP     PPP  P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 693  LPXXXXPPPPPPP 731
            +P    P PPPPP
Sbjct: 1851 IPVSGSPEPPPPP 1863


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,512
Number of Sequences: 438
Number of extensions: 9035
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 36511803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)