Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_D23
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    31   0.30 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.6  

>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 26/99 (26%), Positives = 38/99 (38%)
 Frame = +1

Query: 373 AXSFGCGERYQLTQRR*YGYPQNQGDNAGKKHVSQXPAKGXEPVKRARCXRFSISSPPLT 552
           A +  C   YQ   R+   + ++  +N      S  PA       +A    FS   P  T
Sbjct: 99  ARNSACDRYYQEALRK-KSWSRSLSNNISLSQSSSSPATSSFSDPKA----FSAGVPKFT 153

Query: 553 SITKSTLKSXVAKPHQDYKDTXRFPPGSSLPAXSWFPTL 669
           S T ST+ S    P  ++      PP +  P   W PT+
Sbjct: 154 SDTSSTVSST---PSLNHSLQNSMPPSTPTPPPVWAPTI 189


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 25/89 (28%), Positives = 32/89 (35%), Gaps = 3/89 (3%)
 Frame = +2

Query: 593  PTRTIKIPXVSPLEAPSLXXPGSQPWPLXRIPVPPFXXPGKXGPFLHXS---XPVXXXNS 763
            P+    +P  S    P     G+ P P   +  PP   P    P    S    PV   +S
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176

Query: 764  GXXXFPPQXXGCVCPNPPRSXPNXXPLIP 850
            G    P    G V P PP   P+  P +P
Sbjct: 1177 GIPPVPKPAAG-VPPVPP---PSEAPPVP 1201


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
 Frame = +2

Query: 593  PTRTIKIPXVSPLEA--PSLXXPGSQPWPLXRIPVPPFXXPGKXGP 724
            P   +  P V P  A  P +  P   P P+  +P PP   P   GP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMS-VPPPPSAPPMPAGP 1727


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 19/61 (31%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
 Frame = +2

Query: 653 PGSQPWPLXRIPVPPFXXPGKXGPFLHXSXPVXXXNS-GXXXFPPQXXGCVCPNPPRSXP 829
           P   P P  R    P    G     L    P    N+ G    PPQ      P PPRS P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370

Query: 830 N 832
           +
Sbjct: 371 S 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,813
Number of Sequences: 5004
Number of extensions: 52333
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)