Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_D22
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...    91   1e-19
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...    91   2e-19
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    27   2.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.7  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   4.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.2  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   8.2  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 39/64 (60%), Positives = 50/64 (78%)
 Frame = +2

Query: 314 RGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPY 493
           + RWP KS +F   LL+NAE+NA+ K LD+D+L+I H+QVN AP  RRRTYRAHGR+  Y
Sbjct: 80  QARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAY 139

Query: 494 MSSP 505
           +SSP
Sbjct: 140 LSSP 143



 Score = 73.7 bits (173), Expect = 3e-14
 Identities = 33/56 (58%), Positives = 40/56 (71%)
 Frame = +1

Query: 148 HFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQ 315
           HFKN+ E A  I  M L++A  +L NV E K+ +PFRRFNGGVGR AQ K+FG TQ
Sbjct: 25  HFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVTQ 80


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score = 91.1 bits (216), Expect = 2e-19
 Identities = 39/64 (60%), Positives = 49/64 (76%)
 Frame = +2

Query: 314 RGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPY 493
           + RWP KS  F   LL+NAE+NA+ K LD+D+L+I H+QVN AP  RRRTYRAHGR+  Y
Sbjct: 80  QARWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAY 139

Query: 494 MSSP 505
           +SSP
Sbjct: 140 LSSP 143



 Score = 73.3 bits (172), Expect = 4e-14
 Identities = 33/56 (58%), Positives = 40/56 (71%)
 Frame = +1

Query: 148 HFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQ 315
           HFKN+ E A  I  M L++A  +L NV E K+ +PFRRFNGGVGR AQ K+FG TQ
Sbjct: 25  HFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVTQ 80


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 308 QHRGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVI 418
           +H   WP    EF+ + +++AE N+  +  D  +L+I
Sbjct: 4   EHHSPWPDSLKEFIGRCIQDAEENSQPELEDEVKLLI 40


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 21/74 (28%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
 Frame = +2

Query: 662 LKXXSPPPPXXXXPXXXXXXXXXXXXXSPGPXXXP-PXXGGXTXXPXPXXTQXLWXXLGP 838
           LK   PPPP    P             +P P   P P  GG    P P           P
Sbjct: 729 LKSPPPPPPAVIVPTPAP---------APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779

Query: 839 XPPPXXXAXGKKTF 880
            PPP   A G + +
Sbjct: 780 PPPPAVSAGGSRYY 793


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 313 VLCQTALLEHSDQRRR*SDGMEYTLSFQ 230
           ++C TA+L+H D  RR   G+ + L F+
Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 793  PPPXXNPXPLGXXWAXPPP 849
            PPP   P P G   A PPP
Sbjct: 1716 PPPSAPPMPAGPPSAPPPP 1734


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 143 WFTLRTHMRPQWQS 184
           WFTLRTH    WQ+
Sbjct: 613 WFTLRTHASHIWQN 626


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,105,965
Number of Sequences: 5004
Number of extensions: 58850
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)