Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_D22
(888 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal pro... 107 1e-23
AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal pro... 86 3e-17
U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.5
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 3.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 3.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 3.4
Z48007-1|CAA88052.1| 1140|Caenorhabditis elegans Hypothetical pr... 28 7.8
AC006794-5|AAK68502.1| 821|Caenorhabditis elegans Hypothetical ... 28 7.8
>AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform a protein.
Length = 187
Score = 107 bits (257), Expect = 1e-23
Identities = 50/64 (78%), Positives = 55/64 (85%)
Frame = +2
Query: 314 RGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPY 493
+GRWP KSA+FLL LL+NAESNA+ K LDVD LVI+HI V RA LRRRTYRAHGRINPY
Sbjct: 82 QGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPY 141
Query: 494 MSSP 505
MSSP
Sbjct: 142 MSSP 145
Score = 87.8 bits (208), Expect = 9e-18
Identities = 39/58 (67%), Positives = 47/58 (81%)
Frame = +1
Query: 145 VHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQG 318
VHFKNT+E AMA+R MPLRRA +L +V E KE +PFRRF+GG+GR AQ KQ+ TTQG
Sbjct: 26 VHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRFHGGIGRAAQTKQWNTTQG 83
Score = 36.7 bits (81), Expect = 0.022
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +3
Query: 84 YSREPDNPAKSCKARGSNLR 143
YSR P+N KSCKARGS+LR
Sbjct: 6 YSRAPENSTKSCKARGSDLR 25
Score = 35.1 bits (77), Expect = 0.068
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +3
Query: 489 PTCRLPGHIEVCLSEREDAVARVAPTDDAPSEXKAFQEKXLPRQ 620
P P HIEV L+E+ED V++ PTDDA + K ++ RQ
Sbjct: 140 PYMSSPCHIEVILAEKEDVVSK--PTDDAAPKVKKESKRKQRRQ 181
>AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform b protein.
Length = 159
Score = 86.2 bits (204), Expect = 3e-17
Identities = 41/52 (78%), Positives = 44/52 (84%)
Frame = +2
Query: 350 LQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSP 505
L LL+NAESNA+ K LDVD LVI+HI V RA LRRRTYRAHGRINPYMSSP
Sbjct: 66 LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSP 117
Score = 60.5 bits (140), Expect = 2e-09
Identities = 27/40 (67%), Positives = 32/40 (80%)
Frame = +1
Query: 145 VHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 264
VHFKNT+E AMA+R MPLRRA +L +V E KE +PFRRF
Sbjct: 26 VHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65
Score = 36.7 bits (81), Expect = 0.022
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +3
Query: 84 YSREPDNPAKSCKARGSNLR 143
YSR P+N KSCKARGS+LR
Sbjct: 6 YSRAPENSTKSCKARGSDLR 25
Score = 35.1 bits (77), Expect = 0.068
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +3
Query: 489 PTCRLPGHIEVCLSEREDAVARVAPTDDAPSEXKAFQEKXLPRQ 620
P P HIEV L+E+ED V++ PTDDA + K ++ RQ
Sbjct: 112 PYMSSPCHIEVILAEKEDVVSK--PTDDAAPKVKKESKRKQRRQ 153
>U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical
protein C16B8.3 protein.
Length = 164
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +1
Query: 766 PXXGGVXXGPPPXXNPXPLGXXWAXPPPXXIXXG 867
P GV PPP P P G +A PPP I G
Sbjct: 43 PVGAGVGYAPPP---PRPYGATYAPPPPMGIGAG 73
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/61 (31%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Frame = +1
Query: 676 PSPPPXXXPXXPXXXPXXXXXXXPGARXXXPXXGGVXXGPPPXX---NPXPLGXXWAXPP 846
P PPP P P P P P G+ PPP P P G PP
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRP----PPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 319
Query: 847 P 849
P
Sbjct: 320 P 320
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/61 (31%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Frame = +1
Query: 676 PSPPPXXXPXXPXXXPXXXXXXXPGARXXXPXXGGVXXGPPPXX---NPXPLGXXWAXPP 846
P PPP P P P P P G+ PPP P P G PP
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRP----PPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 329
Query: 847 P 849
P
Sbjct: 330 P 330
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 3.4
Identities = 21/64 (32%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Frame = +1
Query: 676 PSPPPXXXPXX---PXXXPXXXXXXXPGARXXXPXXGG---VXXGPPPXXNPXPLGXXWA 837
P PPP P P P G P GG + GPPP P P G
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP--PPPPGGCPP 770
Query: 838 XPPP 849
PPP
Sbjct: 771 PPPP 774
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/63 (31%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Frame = +1
Query: 676 PSPPPXXXPXX-----PXXXPXXXXXXXPGARXXXPXXGGVXXGPPPXXNPXPLGXXWAX 840
P PPP P P P G P GG PPP P P G
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGC---PPPPPPPPPGGFKGGP 784
Query: 841 PPP 849
PPP
Sbjct: 785 PPP 787
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 3.4
Identities = 21/64 (32%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Frame = +1
Query: 676 PSPPPXXXPXX---PXXXPXXXXXXXPGARXXXPXXGG---VXXGPPPXXNPXPLGXXWA 837
P PPP P P P G P GG + GPPP P P G
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP--PPPPGGCPP 770
Query: 838 XPPP 849
PPP
Sbjct: 771 PPPP 774
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/63 (31%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Frame = +1
Query: 676 PSPPPXXXPXX-----PXXXPXXXXXXXPGARXXXPXXGGVXXGPPPXXNPXPLGXXWAX 840
P PPP P P P G P GG PPP P P G
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGC---PPPPPPPPPGGFKGGP 784
Query: 841 PPP 849
PPP
Sbjct: 785 PPP 787
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 3.4
Identities = 21/64 (32%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Frame = +1
Query: 676 PSPPPXXXPXX---PXXXPXXXXXXXPGARXXXPXXGG---VXXGPPPXXNPXPLGXXWA 837
P PPP P P P G P GG + GPPP P P G
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP--PPPPGGCPP 353
Query: 838 XPPP 849
PPP
Sbjct: 354 PPPP 357
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/63 (31%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Frame = +1
Query: 676 PSPPPXXXPXX-----PXXXPXXXXXXXPGARXXXPXXGGVXXGPPPXXNPXPLGXXWAX 840
P PPP P P P G P GG PPP P P G
Sbjct: 311 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGC---PPPPPPPPPGGFKGGP 367
Query: 841 PPP 849
PPP
Sbjct: 368 PPP 370
>Z48007-1|CAA88052.1| 1140|Caenorhabditis elegans Hypothetical
protein R134.1 protein.
Length = 1140
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -1
Query: 375 DSAFLNNCKRNSADFLGQRPLCCAKLLCL-STATNAAVEATE-WNTLFLFNHVFEVTNST 202
D A+L+ +RN + + PL C+ + C+ STAT A ++ ++L+ NST
Sbjct: 328 DKAYLDYMQRNILNVVKLPPLNCSTVDCVSSTATGMGAYARHLFDVVYLYGIALTRVNST 387
>AC006794-5|AAK68502.1| 821|Caenorhabditis elegans Hypothetical
protein Y50D4A.1 protein.
Length = 821
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 336 DFLGQRPLCCAKLLCLSTATNAAVEATEWNTL 241
D L RP C K+ +S T++ +E EW+ L
Sbjct: 120 DGLPHRPACTIKMRAISMMTSSFMENLEWSRL 151
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,378,742
Number of Sequences: 27780
Number of extensions: 401598
Number of successful extensions: 1063
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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