Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_D21
         (893 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025467-10|AAB71040.2|  154|Caenorhabditis elegans He1 homologu...    59   4e-09
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    32   0.64 
AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    31   1.1  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    30   1.9  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    30   1.9  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    30   1.9  
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z77656-5|CAH04702.1|  308|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    28   7.8  
L25598-4|AAV58888.1|  737|Caenorhabditis elegans Calpain family ...    28   7.8  

>AF025467-10|AAB71040.2|  154|Caenorhabditis elegans He1 homologue
           protein 1 protein.
          Length = 154

 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
 Frame = +2

Query: 203 ELTPGVNSRLCHLKKGKNAKVSFDFTPQFSTTKLKTGLFGLKNGAEIPFDALYNADACTL 382
           ELT     ++C  KKG    +   F P   T KLKT +     G+ +      N+DACT 
Sbjct: 40  ELTVKDGKKVCLFKKGSRPIIQIAFKPSKDTDKLKTSVRAKVGGSAMVDFPQTNSDACTY 99

Query: 383 -TSCPTEAGKTQTLDFSLHIXKKLPTGN-FEFKWKLWNEDNESQMC 514
              CP  AG+ Q  + S+ I +  P G   +  W+L   D+  ++C
Sbjct: 100 GVKCPVSAGENQIFEQSISITENHPAGEVIQVNWQLTRPDSGKEVC 145


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 16/55 (29%), Positives = 18/55 (32%)
 Frame = +2

Query: 698 PPPXPXXXXNXNLFTPXPXXXPXTPXYPXXXPPFAXXXTPXXSXPXXPXXXXXPP 862
           PPP P         +P P   P TP  P   PP         + P  P     PP
Sbjct: 140 PPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPP 194


>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 20/78 (25%), Positives = 21/78 (26%)
 Frame = -2

Query: 886 GXXXXXGXGGXXXXXGXXGXXXXGGXXXXKWGXXGRVXGGXWXGXXXXXEKVXVXXXXGX 707
           G     G GG     G  G    GG     WG      GG W G              G 
Sbjct: 74  GGGNWGGNGGGRGDWGGNGGGGRGGGGRGDWGGNNNGGGGNWGGGGNNDGGWGGNNGGGG 133

Query: 706 GGXXAXPLSGRGXXXXGA 653
           GG       G G    G+
Sbjct: 134 GGRGGGGRGGDGRGPPGS 151


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 814 PPGVXXPXSXXXXXPPPXPXXXPPP 888
           PPG   P S     PPP P   PPP
Sbjct: 747 PPGGLPPISGGPPPPPPPPGGCPPP 771


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 814 PPGVXXPXSXXXXXPPPXPXXXPPP 888
           PPG   P S     PPP P   PPP
Sbjct: 747 PPGGLPPISGGPPPPPPPPGGCPPP 771


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 814 PPGVXXPXSXXXXXPPPXPXXXPPP 888
           PPG   P S     PPP P   PPP
Sbjct: 330 PPGGLPPISGGPPPPPPPPGGCPPP 354


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/40 (40%), Positives = 16/40 (40%)
 Frame = -1

Query: 887 GGGXXXGXGGGXXXXXEXGXXTPGGLXXXQMGGXRXGXGG 768
           GGG   G GGG       G    GG      GG R G GG
Sbjct: 77  GGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGGGG 116


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = -1

Query: 887 GGGXXXGXGGGXXXXXEXGXXTPGGLXXXQMGGXRXGXGG 768
           GGG   G GGG       G    GG      GG   G GG
Sbjct: 156 GGGGGGGCGGGGGGGCGGGSSGGGGYAVAPSGGGGCGGGG 195


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = -1

Query: 887 GGGXXXGXGGGXXXXXEXGXXTPGGLXXXQMGGXRXGXGG 768
           GGG   G GGG       G    GG      GG   G GG
Sbjct: 156 GGGGGGGCGGGGGGGCGGGSSGGGGYAVAPSGGGGCGGGG 195


>Z77656-5|CAH04702.1|  308|Caenorhabditis elegans Hypothetical
           protein F07B10.6 protein.
          Length = 308

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 455 TGNFEFKWKLWNEDNESQMCCY 520
           +G+F F ++L+N+D  SQ  C+
Sbjct: 59  SGHFVFNYQLFNDDKSSQAACF 80


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 19/64 (29%), Positives = 22/64 (34%)
 Frame = +2

Query: 671 PPTGQXXGXPPPXPXXXXNXNLFTPXPXXXPXTPXYPXXXPPFAXXXTPXXSXPXXPXXX 850
           PPT      PPP      + +   P P     +P  P   PP A   TP    P  P   
Sbjct: 466 PPTTPKPAPPPPSRIPNPSPS---PQPAEVSKSPPPPPPLPPIA---TPSSVPPPPPPPP 519

Query: 851 XXPP 862
             PP
Sbjct: 520 PPPP 523


>L25598-4|AAV58888.1|  737|Caenorhabditis elegans Calpain family
           protein 1, isoform b protein.
          Length = 737

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/40 (37%), Positives = 16/40 (40%)
 Frame = -1

Query: 887 GGGXXXGXGGGXXXXXEXGXXTPGGLXXXQMGGXRXGXGG 768
           GGG   G GGG       G    GG      GG + G GG
Sbjct: 54  GGGGGGGGGGGGFGGGNGGFGGGGGGNYGGGGGNQGGGGG 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,778,012
Number of Sequences: 27780
Number of extensions: 339627
Number of successful extensions: 1092
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)