Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_D20
(874 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 33 0.20
AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical ... 33 0.35
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.3
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.3
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.3
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical pr... 28 7.6
X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha nicot... 28 7.6
X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic acety... 28 7.6
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 28 7.6
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 33.5 bits (73), Expect = 0.20
Identities = 17/51 (33%), Positives = 19/51 (37%)
Frame = +3
Query: 717 PXPRQVXKKPXXPXXLSXXKPXPXFXXXPPXXPXXPTPXNPPXXXXPPXPL 869
P P + P P P P F PP P P P PP PP P+
Sbjct: 32 PPPPPMCAPPPLPCPPPPICP-PQFCPPPPMCPPPPPPPPPPMCPPPPPPM 81
>AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical
protein Y64G10A.1 protein.
Length = 302
Score = 32.7 bits (71), Expect = 0.35
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +2
Query: 110 CACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKARAP 265
CA + A ++LNY RT L+ +NC P TT + + A N + AP
Sbjct: 38 CATTCGACSNLNYTRTCLSD-GLKNCACVGEPTTTMLCNTIACNYPRGSEAP 88
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/68 (27%), Positives = 19/68 (27%)
Frame = +2
Query: 665 GGXHXPXKPPXXPXGXFPXPPPSXXKTXXSXVXFXLKTXPXXSXXPPXXXXXPNPXKPPX 844
GG P P G P PPP P PP P P PP
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPP----PPPPPGGLPPISGGPPPPPPPPG 766
Query: 845 XXXPPXXP 868
PP P
Sbjct: 767 GCPPPPPP 774
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/68 (27%), Positives = 19/68 (27%)
Frame = +2
Query: 665 GGXHXPXKPPXXPXGXFPXPPPSXXKTXXSXVXFXLKTXPXXSXXPPXXXXXPNPXKPPX 844
GG P P G P PPP P PP P P PP
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPP----PPPPPGGLPPISGGPPPPPPPPG 766
Query: 845 XXXPPXXP 868
PP P
Sbjct: 767 GCPPPPPP 774
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/68 (27%), Positives = 19/68 (27%)
Frame = +2
Query: 665 GGXHXPXKPPXXPXGXFPXPPPSXXKTXXSXVXFXLKTXPXXSXXPPXXXXXPNPXKPPX 844
GG P P G P PPP P PP P P PP
Sbjct: 294 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPP----PPPPPGGLPPISGGPPPPPPPPG 349
Query: 845 XXXPPXXP 868
PP P
Sbjct: 350 GCPPPPPP 357
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Frame = +3
Query: 717 PXPRQVXKKPXX--PXXLSXXKPXPXFXXXPPXXPXXPTPXNPPXXXXPPXP 866
P P +V + P P P PP P P P NPP P P
Sbjct: 141 PPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIP 192
>Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical
protein F09E8.7 protein.
Length = 507
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +3
Query: 168 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 278
RP + V Q HRRL + PS + R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390
>X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit protein.
Length = 507
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +3
Query: 168 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 278
RP + V Q HRRL + PS + R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390
>X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 507
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +3
Query: 168 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 278
RP + V Q HRRL + PS + R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 28.3 bits (60), Expect = 7.6
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = -2
Query: 471 GIGCGTELQS--EVVVSVN-DLDIVSGHDESKV*WEVLSNNFLSVADPQLVAVLHGVPS 304
G GCG + +S +V +N D D+ ++E + EVL NN S LV+V +P+
Sbjct: 63 GCGCGRKKRSVDDVEGVINMDSDVECNNEELR---EVLENNMKSTPSDSLVSVRSNLPT 118
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,252,621
Number of Sequences: 27780
Number of extensions: 361154
Number of successful extensions: 2001
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1759
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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