Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_D19
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.023
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    23   1.6  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   2.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.6  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    27   3.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.3 bits (75), Expect = 0.023
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = +1

Query: 643 PPPPGXXXXXNPXXVXRGXPPPXPXKGGSXPPP 741
           PPPP       P       PPP P  GG  PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765



 Score = 31.1 bits (67), Expect = 0.21
 Identities = 17/51 (33%), Positives = 19/51 (37%)
 Frame = +1

Query: 589 PPPXXPXLKXXLXXAPXXPPPPGXXXXXNPXXVXRGXPPPXPXKGGSXPPP 741
           PPP    +      AP   PPP       P       PPP P   G+ PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP------PPPPPGVAGAGPPP 777



 Score = 29.9 bits (64), Expect = 0.49
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +3

Query: 642 PPPPXXXXXXKPXXXXEGXPPPXPXKRGLXPPP 740
           PPPP       P       PPP P   G  PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765



 Score = 29.1 bits (62), Expect = 0.86
 Identities = 16/50 (32%), Positives = 16/50 (32%)
 Frame = +3

Query: 591 PPXPPXXQXXXXXXPXXPPPPXXXXXXKPXXXXEGXPPPXPXKRGLXPPP 740
           PP PP         P   P P       P       PPP P   G  PPP
Sbjct: 732 PPPPPPA----VIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +1

Query: 541 PFXXXPPPPXXGKHXXPPPXXPXLKXXLXXAPXXPPPP 654
           P    PP P  G    PPP  P         P  PPPP
Sbjct: 748 PIPVPPPAPIMG--GPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/58 (29%), Positives = 18/58 (31%)
 Frame = +1

Query: 556 PPPPXXGKHXXPPPXXPXLKXXLXXAPXXPPPPGXXXXXNPXXVXRGXPPPXPXKGGS 729
           PPP        P P        +   P  PPPP       P       PPP    GGS
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP--PPPPAVSAGGS 790



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 558 PPPXXGETXXXPPXPPXXQXXXXXXPXXPPPP 653
           PPP        PP PP         P  PPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +3

Query: 558 PPPXXGETXXXPPXPPXXQXXXXXXPXXPPPP 653
           P P        PP PP         P  PPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 20/68 (29%), Positives = 23/68 (33%), Gaps = 6/68 (8%)
 Frame = +1

Query: 556 PPPPXXGKHXXPPPXXPXLKXXLXXAPXXPPPPGXXXXXN---PXXVXRGXPPPXPXKG- 723
           PPPP   ++   PP            P  PPPP      +   P       PPP P    
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNS--SLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370

Query: 724 --GSXPPP 741
             G  PPP
Sbjct: 371 STGRQPPP 378



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 22/92 (23%), Positives = 23/92 (25%), Gaps = 1/92 (1%)
 Frame = +1

Query: 589 PPPXXPXLKXXLXXAPXXPPPPGXXXXXNPXXVXRGXPP-PXPXKGGSXPPPXXGXLXXX 765
           PPP  P     +   P  PP P      NP       PP P P    S            
Sbjct: 253 PPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPP 312

Query: 766 XXXXXXXXXXXXXXFXGGVPLXHXPXXPPPPR 861
                            G      P  PPPPR
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPR 344



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 18/66 (27%), Positives = 19/66 (28%)
 Frame = +1

Query: 541 PFXXXPPPPXXGKHXXPPPXXPXLKXXLXXAPXXPPPPGXXXXXNPXXVXRGXPPPXPXK 720
           P    P  P       PP   P L      AP  PP P       P        PP P  
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMG---APAAPPLPPSAPIAPPLPAGMPAAPPLPPA 472

Query: 721 GGSXPP 738
             + PP
Sbjct: 473 APAPPP 478


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.0 bits (47), Expect(3) = 1.6
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 693 GXPPPXPXKRGLXPP 737
           G PPP P   G  PP
Sbjct: 7   GNPPPPPPPPGFEPP 21



 Score = 20.6 bits (41), Expect(3) = 1.6
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 834 PTXXPPPPP 860
           P+  PPPPP
Sbjct: 21  PSQPPPPPP 29



 Score = 20.6 bits (41), Expect(3) = 1.6
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 846 PPPPPG 863
           PPPPPG
Sbjct: 26  PPPPPG 31


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/67 (25%), Positives = 18/67 (26%), Gaps = 2/67 (2%)
 Frame = +3

Query: 459 PPKKKPPXXTXPKKXXLXXAPFFGXXXXIRXXXPPP--XXGETXXXPPXPPXXQXXXXXX 632
           PP   PP  + P        P       I    PPP          P  P          
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198

Query: 633 PXXPPPP 653
           P  PPPP
Sbjct: 199 PKVPPPP 205



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/47 (29%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
 Frame = +1

Query: 517 PPFLGXXXPFXXX-PPPPXXGKHXXPPPXXPXLKXXLXXAPXXPPPP 654
           PP      P     PPP         PP  P L   +   P   PPP
Sbjct: 158 PPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/61 (24%), Positives = 16/61 (26%)
 Frame = +3

Query: 558  PPPXXGETXXXPPXPPXXQXXXXXXPXXPPPPXXXXXXKPXXXXEGXPPPXPXKRGLXPP 737
            P P        P   P         P  PPP        P        PP P   G+ P 
Sbjct: 1035 PVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPV 1094

Query: 738  P 740
            P
Sbjct: 1095 P 1095



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 29/129 (22%), Positives = 31/129 (24%)
 Frame = +3

Query: 354  PPPXXXPPXXGGXXKKXXXPPXXGXXKXPXXXXXXPPKKKPPXXTXPKKXXLXXAPFFGX 533
            P P   PP           P   G    P      PP   P       K  +   P    
Sbjct: 1115 PAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174

Query: 534  XXXIRXXXPPPXXGETXXXPPXPPXXQXXXXXXPXXPPPPXXXXXXKPXXXXEGXPPPXP 713
               I     PP        PP PP  +         PP P       P       PP   
Sbjct: 1175 SSGI-----PPVPKPAAGVPPVPPPSEA--------PPVPKPSVGVPPVPPPSTAPPVPT 1221

Query: 714  XKRGLXPPP 740
               GL P P
Sbjct: 1222 PSAGLPPVP 1230



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/61 (26%), Positives = 17/61 (27%)
 Frame = +1

Query: 559  PPPXXGKHXXPPPXXPXLKXXLXXAPXXPPPPGXXXXXNPXXVXRGXPPPXPXKGGSXPP 738
            P P        P   P +      AP  PPP        P        PP P   G  P 
Sbjct: 1035 PVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPV 1094

Query: 739  P 741
            P
Sbjct: 1095 P 1095


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/54 (29%), Positives = 19/54 (35%)
 Frame = +1

Query: 589 PPPXXPXLKXXLXXAPXXPPPPGXXXXXNPXXVXRGXPPPXPXKGGSXPPPXXG 750
           PPP  P ++  L   P    P G         V  G   P    G + PPP  G
Sbjct: 83  PPPMDPSMRGSLLSGPGVARPAGRGIPLGQAPV--GLAGPVRGVGYTAPPPPAG 134


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/38 (34%), Positives = 14/38 (36%)
 Frame = +1

Query: 541  PFXXXPPPPXXGKHXXPPPXXPXLKXXLXXAPXXPPPP 654
            P    P PP       PPP  P +       P  PPPP
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMP---AGPPSAPPPP 1734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,814,136
Number of Sequences: 5004
Number of extensions: 24829
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)